Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Forward (+)

9462206 .. 9464164

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGTGACTATGATAAAGATGGGTTTGATTGTTGCAGTTTTGGGTATAGTGTCGTTTGCATTCGGAATTGCTGCTGAAATCCATAAGCCTGCAGCTGGTATCCCCATAATGGGCCGGAACGGCGTAGTGATGTGCAAGTACCCGTCTGATTCCACGGTTGTCTATGGGTATCTGTCCTTTGCATTTCTGGTAGCATCTTCCTTGACTGGATTCCTCTCTGTATTTTACCCCTACAAAGGCAAATCAGTTCCATCCAGTGCTTTTCTCCAAAGCACTTTACTTGTTACTTTCTTCAACAGCACTCTGGGTGCAATCGGATTAGCAGCAGCATTATTGTTATGGCCAACGATTTCTGGGCAGCAGCACCACAACAACAACATGTATCAAAATCTCAGCAGCGCAAGTGGTTGCCCTACAGCCAAAACTGGTGTTCTTGGCGGAGGAGCTTTTTTATCTCTCAATTCGTCCCTACTGTGGTTGGTTTGCCTCATGCTGGCTAGCAATGCAAGATACGACTTTTTGGATGATTTGAGTGGAGAATCTAAAGCTAAGGAAGCTACCACTTCTGGGTATATGGCAGCGCTTGAAAAAGGACTGGATAACATTTTTGACGGCGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

209

Amino Acids

21.88

Weight (kDa)

6.81

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AcoI	YGGCCR	1 cut(s)	344
AfaI	GTAC	1 cut(s)	143
AfeI	AGCGCT	1 cut(s)	585
AfiI	CCNNNNNNNGG	7 cut(s)	98, 112, 113, 239, 477, 496, 570
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	298, 590
AluBI	AGCT	4 cut(s)	98, 449, 551, 560
AluI	AGCT	4 cut(s)	98, 449, 551, 560
Aor51HI	AGCGCT	1 cut(s)	585
AoxI	GGCC	2 cut(s)	115, 344
ApeKI	GCWGC	8 cut(s)	74, 95, 326, 329, 361, 364, 399, 581
AspLEI	GCGC	2 cut(s)	404, 586
AspS9I	GGNCC	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	346
BbvI	GCAGC	8 cut(s)	61, 107, 338, 341, 373, 376, 411, 593
BccI	CCATC	2 cut(s)	16, 262
BceAI	ACGGC	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	93, 417
BfoI	RGCGCY	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	8 cut(s)	75, 96, 327, 330, 362, 365, 400, 582
BlsI	GCNGC	8 cut(s)	76, 97, 328, 331, 363, 366, 401, 583
BmgT120I	GGNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	206
BmtI	GCTAGC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 112, 113, 239, 477, 496, 570
Bse1I	ACTGG	4 cut(s)	214, 258, 433, 603
Bse3DI	GCAATG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	254, 532
BseLI	CCNNNNNNNGG	7 cut(s)	98, 112, 113, 239, 477, 496, 570
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	4 cut(s)	214, 258, 433, 603
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	8 cut(s)	61, 107, 338, 341, 373, 376, 411, 593
BshFI	GGCC	2 cut(s)	117, 346
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	7 cut(s)	98, 112, 113, 239, 477, 496, 570
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	117, 346
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	117, 346
BspCNI	CTCAG	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	4 cut(s)	214, 258, 433, 603
BssECI	CCNNGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	160, 477
BstC8I	GCNNGC	3 cut(s)	93, 498, 502
BstDEI	CTNAG	2 cut(s)	395, 552
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	254, 532
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	404, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 506, 557
BstNSI	RCATGY	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	93, 417
BstV1I	GCAGC	8 cut(s)	61, 107, 338, 341, 373, 376, 411, 593
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	117, 346
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	254, 532
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 265
Cac8I	GCNNGC	3 cut(s)	93, 498, 502
CfoI	GCGC	2 cut(s)	404, 586
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	382, 493
CviJI	RGCY	9 cut(s)	91, 98, 117, 346, 422, 449, 500, 551, 560
CviKI_1	RGCY	9 cut(s)	91, 98, 117, 346, 422, 449, 500, 551, 560
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	395, 552
EaeI	YGGCCR	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	456
Eco47III	AGCGCT	1 cut(s)	585
FaeI	CATG	2 cut(s)	385, 496
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	381, 492
Fnu4HI	GCNGC	8 cut(s)	75, 96, 327, 330, 362, 365, 400, 582
FokI	GGATG	2 cut(s)	241, 539
Fsp4HI	GCNGC	8 cut(s)	75, 96, 327, 330, 362, 365, 400, 582
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	2 cut(s)	403, 585
GluI	GCNGC	8 cut(s)	75, 96, 327, 330, 362, 365, 400, 582
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	117, 346
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	2 cut(s)	404, 586
Hin1II	CATG	2 cut(s)	385, 496
Hin6I	GCGC	2 cut(s)	402, 584
HinP1I	GCGC	2 cut(s)	402, 584
HinfI	GANTC	3 cut(s)	152, 213, 542
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	68, 151, 320
HpyCH4III	ACNGT	2 cut(s)	160, 477
HpyCH4V	TGCA	7 cut(s)	38, 62, 95, 138, 185, 314, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 506, 557
HpyF3I	CTNAG	2 cut(s)	395, 552
Hsp92II	CATG	2 cut(s)	385, 496
HspAI	GCGC	2 cut(s)	402, 584
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	8 cut(s)	61, 107, 338, 341, 373, 376, 411, 593
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	7, 286
MboII	GAAGA	2 cut(s)	192, 286
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	2 cut(s)	69, 463
MluNI	TGGCCA	1 cut(s)	346
MnlI	CCTC	3 cut(s)	227, 437, 500
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	123, 506, 557
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	2 cut(s)	385, 496
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	385
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	152, 213, 542
PkrI	GCNGC	8 cut(s)	76, 97, 328, 331, 363, 366, 401, 583
PscI	ACATGT	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	8 cut(s)	75, 96, 327, 330, 362, 365, 400, 582
Sau96I	GGNCC	1 cut(s)	115
SetI	ASST	4 cut(s)	100, 451, 553, 562
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	2 cut(s)	93, 417
Sse9I	AATT	2 cut(s)	69, 463
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	160, 477
TasI	AATT	2 cut(s)	69, 463
TfiI	GAWTC	3 cut(s)	152, 213, 542
TscAI	CASTG	2 cut(s)	12, 265
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	8 cut(s)	74, 95, 326, 329, 361, 364, 399, 581
Tsp45I	GTSAC	1 cut(s)	7
TspRI	CASTG	2 cut(s)	12, 265
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.