Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

44652832 .. 44653587

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0355700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCGAGATGTAAGCAAACAGCTCATCGTATTCGCAGTTCCACGTCAGGTGCGACCGGTCAAAACACCCGAGGTGGAAGCCGTGTTGGAAGAGACCAAAGCATACCTATCATACAACCAATAACCCGCCCGGCGGATTCACTTAGTCATGGTGTCAAAGCTCAAAAGCCAGAGCACAAGAATCCTTCAGCACCGATTGTGCACATTGATCCTGATATCCATTTGTCATCGAAGGAGTTTTCTGGTAAGGTCAAGGGATGTGGAAGTAACAGGATTTGTGCGCATTGGTATGCTAGGTTGCCTCAAAATGTGAAGGATAAAATTGTGGCGGCTAGTTTTGGAGAATTTGTCAAATGCCTAGTACCAACCGGAAGGTGTGACCAGAAATTGCTGATTGCGTTGGCGGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

137

Amino Acids

14.92

Weight (kDa)

10.04

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
AciI	CCGC	4 cut(s)	127, 134, 329, 404
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	45
AluBI	AGCT	2 cut(s)	23, 161
AluI	AGCT	2 cut(s)	23, 161
Alw21I	GWGCWC	2 cut(s)	177, 204
Alw26I	GTCTC	1 cut(s)	87
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	344
AsiGI	ACCGGT	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	177, 204
BceAI	ACGGC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	3 cut(s)	294, 333, 359
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	2 cut(s)	56, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	57
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	177, 204
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	57, 131, 369
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	177, 204
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	4 cut(s)	127, 134, 329, 404
BspPI	GGATC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	204
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	362
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	5 cut(s)	23, 81, 161, 169, 332
CviKI_1	RGCY	5 cut(s)	23, 81, 161, 169, 332
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	217
FaeI	CATG	1 cut(s)	152
FaiI	YATR	4 cut(s)	104, 113, 150, 291
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	330
FspAI	RTGCGCAY	1 cut(s)	282
FspBI	CTAG	3 cut(s)	294, 333, 359
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	3 cut(s)	57, 131, 369
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	2 cut(s)	137, 181
HpaII	CCGG	3 cut(s)	57, 131, 369
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	195, 226, 307, 366
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	33, 70, 144, 183, 225, 228, 256, 382, 395
MaeI	CTAG	3 cut(s)	294, 333, 359
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	266, 377
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	177, 204
MluCI	AATT	3 cut(s)	321, 344, 386
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	65, 312
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	3 cut(s)	57, 131, 369
MspR9I	CCNGG	1 cut(s)	131
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	377
NsbI	TGCGCA	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	137, 181
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	22, 54
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	177, 204
SetI	ASST	9 cut(s)	25, 47, 52, 76, 109, 163, 252, 299, 377
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	321, 344, 386
SsiI	CCGC	4 cut(s)	127, 134, 329, 404
SspMI	CTAG	3 cut(s)	294, 333, 359
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	230
TasI	AATT	3 cut(s)	321, 344, 386
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	137, 181
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	344
XspI	CTAG	3 cut(s)	294, 333, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.