Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

38679181 .. 38681497

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G463400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTGTCACCGTGAAGCAGATGTCATTGACAGTGGCCTTTTTCGGTGTGCTCTCGTTCGTTTTAGGAGTGATTGCCGAAAACAAGAAGCCTGCATCTGGAACTCCAATTCCGGGGAAAGGTGTTGTGTTCTGCAAGTATCCTGCTGACCCATCAGTTGTCCTGGGATATCTGTCTTTTGCCTTCCTCCTGGTATCTACAGTGGCTGGGTTCTTGTCATTGTTTTACCCATATAAAGGAAAGGCCCTCCCACAGGCCGCTTTGTTCCGAAGCACTAGTTTTGTTGTATTCTTCAACATTTCTCTGCTTACAGCCGGATTAGCTGCAGCTCTGTTGCTATGGCCCACAATAACCGAGCAACTTCATCGATCACGAAATGTTCATCGTAATCTTGATACCGCTTGCCCAACTGCTAAGACTGGACTCCTAGGTGGCGGCGCTTTTGTATCCCTTGATGCATCACTGTTGTGGTTGGTTGCCCTTATGTTGGCTGACAATGCCCGAGAGGATTACTTCGAGGAGATTGAAGAGGATGTTAAGGGTGAGTACGGACAAGTTTCTGCAACTGATTATGATGGACGTGTGAATGTGAAAGGAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

202

Amino Acids

21.54

Weight (kDa)

6.72

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	258, 399, 435
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	6 cut(s)	98, 113, 119, 236, 253, 487
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	2 cut(s)	295, 527
AhlI	ACTAGT	1 cut(s)	275
AjiI	CACGTC	1 cut(s)	581
AjnI	CCWGG	2 cut(s)	162, 189
AleI	CACNNNNGTG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	2 cut(s)	323, 329
AluI	AGCT	2 cut(s)	323, 329
Alw21I	GWGCWC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	4 cut(s)	36, 243, 255, 341
ApeKI	GCWGC	2 cut(s)	323, 326
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	244, 342
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	501
AvrII	CCTAGG	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	310, 338
BccI	CCATC	2 cut(s)	160, 569
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	2 cut(s)	164, 191
BciVI	GTATCC	2 cut(s)	150, 457
BcnI	CCSGG	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	2 cut(s)	276, 428
BfmI	CTRYAG	2 cut(s)	198, 324
BfoI	RGCGCY	1 cut(s)	441
BfuI	GTATCC	2 cut(s)	150, 457
BisI	GCNGC	4 cut(s)	258, 324, 327, 436
BlnI	CCTAGG	1 cut(s)	427
BlsI	GCNGC	4 cut(s)	259, 325, 328, 437
Bme1390I	CCNGG	3 cut(s)	114, 164, 191
BmeT110I	CYCGRG	1 cut(s)	501
BmgBI	CACGTC	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	244, 342
BmrFI	CCNGG	3 cut(s)	114, 164, 191
BmsI	GCATC	3 cut(s)	104, 445, 467
BpuMI	CCSGG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	113, 163, 427
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 113, 119, 236, 253, 487
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	164, 191
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	113, 163, 427
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	6 cut(s)	98, 113, 119, 236, 253, 487
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	2 cut(s)	310, 338
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	4 cut(s)	38, 245, 257, 343
BshVI	ATCGAT	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	113, 315
BslI	CCNNNNNNNGG	6 cut(s)	98, 113, 119, 236, 253, 487
BsnI	GGCC	4 cut(s)	38, 245, 257, 343
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	368
BspACI	CCGC	3 cut(s)	258, 399, 435
BspANI	GGCC	4 cut(s)	38, 245, 257, 343
BspDI	ATCGAT	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	113, 163, 427
BssMI	GATC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	164, 191
Bst4CI	ACNGT	4 cut(s)	13, 34, 202, 465
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	93, 403
BstDEI	CTNAG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 497
BstNI	CCWGG	2 cut(s)	164, 191
BstSCI	CCNGG	3 cut(s)	112, 162, 189
BstSFI	CTRYAG	2 cut(s)	198, 324
BstV1I	GCAGC	2 cut(s)	310, 338
Bsu15I	ATCGAT	1 cut(s)	367
BsuI	GTATCC	2 cut(s)	150, 457
BsuRI	GGCC	4 cut(s)	38, 245, 257, 343
BsuTUI	ATCGAT	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	39, 207, 461
Cac8I	GCNNGC	2 cut(s)	93, 403
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	244, 342
ClaI	ATCGAT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	547
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	162, 189
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	427
FaiI	YATR	5 cut(s)	232, 234, 340, 485, 573
Fnu4HI	GCNGC	4 cut(s)	258, 324, 327, 436
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	258, 324, 327, 436
FspBI	CTAG	2 cut(s)	276, 428
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	4 cut(s)	258, 324, 327, 436
GsaI	CCCAGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	38, 245, 257, 343
HapII	CCGG	2 cut(s)	113, 315
HhaI	GCGC	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	423
HpaII	CCGG	2 cut(s)	113, 315
HphI	GGTGA	1 cut(s)	554
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	99, 372, 392
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	4 cut(s)	13, 34, 202, 465
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	5 cut(s)	95, 135, 326, 458, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 497
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	580
HspAI	GCGC	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	368
Lsp1109I	GCAGC	2 cut(s)	310, 338
LweI	GCATC	3 cut(s)	104, 445, 467
MaeI	CTAG	2 cut(s)	276, 428
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	2 cut(s)	283, 539
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	197, 257, 499, 511, 523
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	466
MspI	CCGG	2 cut(s)	113, 315
MspR9I	CCNGG	3 cut(s)	114, 164, 191
MvaI	CCWGG	2 cut(s)	164, 191
MwoI	GCNNNNNNNGC	2 cut(s)	320, 497
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	259, 325, 328, 437
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	162, 189
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	162, 189
PspPI	GGNCC	2 cut(s)	244, 342
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	4 cut(s)	258, 324, 327, 436
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	2 cut(s)	244, 342
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	3 cut(s)	114, 164, 191
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	5 cut(s)	124, 325, 331, 433, 583
SfaNI	GCATC	3 cut(s)	104, 445, 467
SfcI	CTRYAG	2 cut(s)	198, 324
SmiMI	CAYNNNNRTG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	3 cut(s)	258, 399, 435
SspMI	CTAG	2 cut(s)	276, 428
StyD4I	CCNGG	3 cut(s)	112, 162, 189
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	4 cut(s)	13, 34, 202, 465
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	367, 516
TasI	AATT	1 cut(s)	108
TauI	GCSGC	2 cut(s)	260, 438
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	3 cut(s)	39, 207, 468
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	323, 326
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	353, 371
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	3 cut(s)	39, 207, 468
XagI	CCTNNNNNAGG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	427
XspI	CTAG	2 cut(s)	276, 428
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.