Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Forward (+)

75248109 .. 75251142

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG573400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCAAACATCAGGATTTGATACAACACGAAGATTTTTTGTTGACTCTGTTCAGCTTTGTCCCTTACAAAGACCTCGTAAGTGGGAGAGTGTTGTAACATTCTCTTCGCCTGCTGCCAAAAGCTTTTCATTTCCTGTTGTGGGTGGTCAGACAATGGAATTAGCTATAGCTCAGTTTTGGTCAAGTGGCATAGGAAGCAACGAAACAACTTGTGTGGATTTTGAGATTGTGTTTCATGGGATTAATGTTAATAAAGAGGAACTAGTGCTTGATGGAAGTGAGGCACCAGTAAGAATTGAAGCTGAAGCTCTACTAGCATCCGAGAAACTTGCACCTGCTGCTACTCTAAGCAAGATCAGAATTCCATATCGACCAGTTGCTGCTGAACTTTGTTCTCTTCCAACAGATTGTGACAAACTACCCTCAGAAAAACGTATTTTGGCGCTGACATTAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

5.22

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPPII_GBD	PF21316	7 - 62	5.8e-07	TPPII, galactose-binding domain-like
TPPII	PF12580	104 - 152	3.1e-06	Tripeptidyl peptidase II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	299
AhlI	ACTAGT	1 cut(s)	262
AluBI	AGCT	6 cut(s)	55, 123, 164, 170, 302, 308
AluI	AGCT	6 cut(s)	55, 123, 164, 170, 302, 308
AlwNI	CAGNNNCTG	1 cut(s)	380
ApeKI	GCWGC	3 cut(s)	113, 338, 380
ApoI	RAATTY	1 cut(s)	360
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	283
BbvI	GCAGC	3 cut(s)	100, 325, 367
BccI	CCATC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 314
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	114, 339, 381
BlsI	GCNGC	3 cut(s)	115, 340, 382
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	287, 374
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	185, 438
BseNI	ACTGG	2 cut(s)	287, 374
BseXI	GCAGC	3 cut(s)	100, 325, 367
BshNI	GGYRCC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	184, 437
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	287, 374
BssMI	GATC	1 cut(s)	354
Bst6I	CTCTTC	2 cut(s)	109, 402
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	171, 347, 424
BstF5I	GGATG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 314, 338
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	100, 325, 367
BtsCI	GGATG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	6 cut(s)	55, 123, 164, 170, 302, 308
CviKI_1	RGCY	6 cut(s)	55, 123, 164, 170, 302, 308
DdeI	CTNAG	3 cut(s)	171, 347, 424
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	109, 402
EarI	CTCTTC	2 cut(s)	109, 402
Eco57I	CTGAAG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	360
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	167, 191, 237, 367
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	114, 339, 381
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	114, 339, 381
FspBI	CTAG	2 cut(s)	263, 314
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	3 cut(s)	114, 339, 381
HaeII	RGCGCY	1 cut(s)	446
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	4 cut(s)	150, 322, 359, 427
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	433, 455
HpyCH4V	TGCA	2 cut(s)	4, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 314, 338
HpyF3I	CTNAG	3 cut(s)	171, 347, 424
HpySE526I	ACGT	2 cut(s)	433, 455
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	443
Kzo9I	GATC	1 cut(s)	354
LpnPI	CCDG	5 cut(s)	123, 147, 300, 348, 387
Lsp1109I	GCAGC	3 cut(s)	100, 325, 367
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	263, 314
MaeII	ACGT	2 cut(s)	433, 455
MaeIII	GTNAC	2 cut(s)	94, 410
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	42, 96, 389
MluCI	AATT	3 cut(s)	158, 294, 360
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	4 cut(s)	84, 250, 274, 433
MseI	TTAA	3 cut(s)	243, 249, 452
MslI	CAYNNNNRTG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	195, 314, 338
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	115, 340, 382
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	243, 249, 452
SatI	GCNGC	3 cut(s)	114, 339, 381
Sau3AI	GATC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	3 cut(s)	158, 294, 360
SspMI	CTAG	2 cut(s)	263, 314
TaiI	ACGT	2 cut(s)	436, 458
TaqI	TCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	158, 294, 360
Tru1I	TTAA	3 cut(s)	243, 249, 452
Tru9I	TTAA	3 cut(s)	243, 249, 452
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	113, 338, 380
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	117, 224
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	360
XspI	CTAG	2 cut(s)	263, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.