Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

66711415 .. 66716576

Gene Structure 5162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG515000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGACAGTTATTACTATGAAGAAGATGTCTGTGCTTGTTGCAGCACTTGGTATTCTTTCGTTTGTGTTTGGTATTCTCGCTGAAACTAAGAAGCCTGCAGCCGGAGTTCCCATAATAGGGAAAGGCATGGTGATTTGCAAGTACCCATCTGATCCAACGCTTGCTTATGCGTGGCTATCCTTTGGATTTCTTCTGCTATGTTCTGCGGTTGGTTGGTTCTCTATATTTTACAGCTACAAAGGCAGAAAAGCTCCCGCATCTGTTTTCTTCCAGTGCTCTACCTTCTTCTCCTTCTTCACCATTACCCTGGGTACAATAGGATTAGCAGCTGCATTTTTGCTGTGGCCTGTAGCGACGCATCATCACCCAAATTATAACATTATTGGGAATCAAGATCCGCACAGCGCCACATGCCCAACTGCCAAAACTGGTGTTCTCGGCGGAGGAGCCTTCATGTCCCTCAACTCATCGCTACTGTGGTTAGTTTGCTTCATCTTGGCTAGCAATGCAAGAGAAGACTACTTTGAAGAATTGGATAGTGTCGAAAAACCTAAACACATTGAGAAAGCTGAAGCTGGACATACCAAGGCACTTGAAGACGATGACAGCAGCGAGATTAGCTCCCAGTGGCCACCGGCAGCTGGAAAACCAGTGCCATGGAAAGATGTTGTTATTTGCAAGTATCCTTCTGATCCTTCGGTGGCGTTGGGATATCTGTCATTTGCATTTCTCCTTGTATCTACAGTGGTTGGGTTCTTGTCACTGTTTTACCCATATCAAGGGAAGTCCCTTCCGCAAGCTGCTTTGTTCCGGAGCAAGAGTTTCGTTGTCTTCTTCAACATTTCTTTGCTTACAGCGGGACTAGCTGCAGCTCTGTTGCTGTGGACTACAATAACGGAGCAACTTCATCTATCACGAAATGTCCATCACAATCTTAAAACAGACTGCCCCACTGCTAAGACCGGTCTCCTTGGTGGTGGTGCATTTGTATCCCTTGATTCATCCCTTTTCTGGTTGGTTGCCCTCATGTTGGCCGACAATGCCCGAGAGGACTACTTTGAGGAGTCGGATAAGGATGTCAAGGGTAGTGGGTATACAGACGTACATGGAGCTGATTATGGACAACATGTTGTAAAAGGTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

382

Amino Acids

41.39

Weight (kDa)

6.59

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1218	PF06749	61 - 157	1.9e-08	Protein of unknown function (DUF1218)
DUF1218	PF06749	240 - 335	4.5e-18	Protein of unknown function (DUF1218)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	1094
AccIII	TCCGGA	1 cut(s)	810
AciI	CCGC	6 cut(s)	206, 255, 398, 441, 794, 857
AclWI	GGATC	3 cut(s)	146, 389, 686
AcoI	YGGCCR	2 cut(s)	629, 1032
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	143, 313, 1104
AfiI	CCNNNNNNNGG	7 cut(s)	101, 116, 117, 641, 779, 1011, 1030
AflIII	ACRYGT	1 cut(s)	1126
AgeI	ACCGGT	1 cut(s)	962
AgsI	TTSAA	3 cut(s)	527, 596, 838
AjnI	CCWGG	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	971
AlwI	GGATC	3 cut(s)	146, 389, 686
Ama87I	CYCGRG	1 cut(s)	1044
Aor13HI	TCCGGA	1 cut(s)	810
AoxI	GGCC	3 cut(s)	344, 629, 1032
ApeKI	GCWGC	9 cut(s)	41, 98, 326, 329, 609, 638, 800, 866, 869
AsiGI	ACCGGT	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	3 cut(s)	142, 289, 356
AsuNHI	GCTAGC	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	1044
BalI	TGGCCA	1 cut(s)	631
BbsI	GAAGAC	3 cut(s)	522, 603, 823
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	9 cut(s)	53, 110, 316, 338, 621, 650, 787, 853, 881
BccI	CCATC	2 cut(s)	154, 933
BcgI	CGANNNNNNTGC	2 cut(s)	805, 839
BciT130I	CCWGG	1 cut(s)	308
BciVI	GTATCC	2 cut(s)	693, 1000
BcoDI	GTCTC	1 cut(s)	971
BfaI	CTAG	2 cut(s)	501, 863
BfmI	CTRYAG	4 cut(s)	96, 348, 741, 867
BfoI	RGCGCY	1 cut(s)	408
BfuI	GTATCC	2 cut(s)	693, 1000
BisI	GCNGC	9 cut(s)	42, 99, 327, 330, 610, 639, 801, 867, 870
BlsI	GCNGC	9 cut(s)	43, 100, 328, 331, 611, 640, 802, 868, 871
Bme1390I	CCNGG	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	1044
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	2 cut(s)	266, 367
BmtI	GCTAGC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	3 cut(s)	522, 603, 823
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	5 cut(s)	306, 307, 585, 656, 970
BsaWI	WCCGGW	2 cut(s)	810, 962
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	7 cut(s)	101, 116, 117, 641, 779, 1011, 1030
Bse118I	RCCGGY	2 cut(s)	634, 962
Bse1I	ACTGG	4 cut(s)	271, 433, 625, 650
Bse3DI	GCAATG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	5 cut(s)	306, 307, 585, 656, 970
BseGI	GGATG	2 cut(s)	1001, 1081
BseLI	CCNNNNNNNGG	7 cut(s)	101, 116, 117, 641, 779, 1011, 1030
BseMI	GCAATG	1 cut(s)	511
BseNI	ACTGG	4 cut(s)	271, 433, 625, 650
BseRI	GAGGAG	2 cut(s)	459, 1076
BseXI	GCAGC	9 cut(s)	53, 110, 316, 338, 621, 650, 787, 853, 881
BshFI	GGCC	3 cut(s)	346, 631, 1034
BshTI	ACCGGT	1 cut(s)	962
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	1044
BsiSI	CCGG	4 cut(s)	102, 635, 811, 963
BslFI	GGGAC	3 cut(s)	442, 772, 873
BslI	CCNNNNNNNGG	7 cut(s)	101, 116, 117, 641, 779, 1011, 1030
BsmAI	GTCTC	1 cut(s)	971
BsmFI	GGGAC	3 cut(s)	442, 772, 873
BsnI	GGCC	3 cut(s)	346, 631, 1034
Bso31I	GGTCTC	1 cut(s)	971
BsoBI	CYCGRG	1 cut(s)	1044
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	151, 394, 691
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	6 cut(s)	206, 255, 398, 441, 794, 857
BspANI	GGCC	3 cut(s)	346, 631, 1034
BspEI	TCCGGA	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	2 cut(s)	100, 871
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	3 cut(s)	146, 389, 686
BspTNI	GGTCTC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	634, 962
BsrI	ACTGG	4 cut(s)	271, 433, 625, 650
BssAI	RCCGGY	2 cut(s)	634, 962
BssECI	CCNNGG	5 cut(s)	306, 307, 585, 656, 970
BssMI	GATC	3 cut(s)	151, 394, 691
BssNAI	GTATAC	1 cut(s)	1095
BssT1I	CCWWGG	3 cut(s)	585, 656, 970
Bst1107I	GTATAC	1 cut(s)	1095
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	4 cut(s)	7, 477, 745, 765
BstC8I	GCNNGC	4 cut(s)	96, 162, 502, 798
BstDEI	CTNAG	2 cut(s)	87, 957
BstDSI	CCRYGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	1001, 1081
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	3 cut(s)	154, 397, 694
BstMAI	GTCTC	1 cut(s)	971
BstMBI	GATC	3 cut(s)	151, 394, 691
BstMWI	GCNNNNNNNGC	6 cut(s)	240, 411, 506, 618, 863, 1040
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	414, 1130
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	4 cut(s)	96, 348, 741, 867
BstV1I	GCAGC	9 cut(s)	53, 110, 316, 338, 621, 650, 787, 853, 881
BstV2I	GAAGAC	3 cut(s)	522, 603, 823
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	2 cut(s)	307, 657
BstYI	RGATCY	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	1095
BsuI	GTATCC	2 cut(s)	693, 1000
BsuRI	GGCC	3 cut(s)	346, 631, 1034
BtgI	CCRYGG	1 cut(s)	656
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	1001, 1081
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	6 cut(s)	278, 632, 657, 750, 761, 951
Cac8I	GCNNGC	4 cut(s)	96, 162, 502, 798
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	2 cut(s)	634, 962
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	142, 312, 1103
CspAI	ACCGGT	1 cut(s)	962
CspCI	CAANNNNNGTGG	2 cut(s)	1069, 1104
CviAII	CATG	7 cut(s)	127, 411, 454, 657, 1027, 1106, 1127
CviQI	GTAC	3 cut(s)	142, 312, 1103
DdeI	CTNAG	2 cut(s)	87, 957
DpnI	GATC	3 cut(s)	153, 396, 693
DpnII	GATC	3 cut(s)	151, 394, 691
EaeI	YGGCCR	2 cut(s)	629, 1032
EciI	GGCGGA	1 cut(s)	456
Eco130I	CCWWGG	3 cut(s)	585, 656, 970
Eco31I	GGTCTC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1044
EcoRII	CCWGG	1 cut(s)	306
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	3 cut(s)	585, 656, 970
ErhI	CCWWGG	3 cut(s)	585, 656, 970
FaeI	CATG	7 cut(s)	130, 414, 457, 660, 1030, 1109, 1130
FaqI	GGGAC	3 cut(s)	442, 772, 873
FatI	CATG	7 cut(s)	126, 410, 453, 656, 1026, 1105, 1126
FauI	CCCGC	2 cut(s)	262, 850
FblI	GTMKAC	1 cut(s)	1094
Fnu4HI	GCNGC	9 cut(s)	42, 99, 327, 330, 610, 639, 801, 867, 870
FokI	GGATG	2 cut(s)	988, 1088
Fsp4HI	GCNGC	9 cut(s)	42, 99, 327, 330, 610, 639, 801, 867, 870
FspBI	CTAG	2 cut(s)	501, 863
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	9 cut(s)	42, 99, 327, 330, 610, 639, 801, 867, 870
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	346, 631, 1034
HapII	CCGG	4 cut(s)	102, 635, 811, 963
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	7 cut(s)	130, 414, 457, 660, 1030, 1109, 1130
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	388, 998, 1064
HpaII	CCGG	4 cut(s)	102, 635, 811, 963
HphI	GGTGA	3 cut(s)	142, 289, 356
Hpy166II	GTNNAC	2 cut(s)	885, 1095
Hpy188I	TCNGA	3 cut(s)	151, 691, 1069
Hpy188III	TCNNGA	3 cut(s)	392, 811, 915
Hpy8I	GTNNAC	2 cut(s)	885, 1095
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	6 cut(s)	292, 301, 460, 696, 705, 800
HpyCH4III	ACNGT	4 cut(s)	7, 477, 745, 765
HpyCH4IV	ACGT	1 cut(s)	1101
HpyCH4V	TGCA	9 cut(s)	41, 98, 138, 332, 509, 678, 725, 869, 983
HpyF10VI	GCNNNNNNNGC	6 cut(s)	240, 411, 506, 618, 863, 1040
HpyF3I	CTNAG	2 cut(s)	87, 957
HpySE526I	ACGT	1 cut(s)	1101
Hsp92II	CATG	7 cut(s)	130, 414, 457, 660, 1030, 1109, 1130
HspAI	GCGC	1 cut(s)	405
Kpn2I	TCCGGA	1 cut(s)	810
Kzo9I	GATC	3 cut(s)	151, 394, 691
LmnI	GCTCC	6 cut(s)	256, 446, 626, 813, 898, 1109
Lsp1109I	GCAGC	9 cut(s)	53, 110, 316, 338, 621, 650, 787, 853, 881
LweI	GCATC	2 cut(s)	266, 367
MaeI	CTAG	2 cut(s)	501, 863
MaeII	ACGT	1 cut(s)	1101
MaeIII	GTNAC	1 cut(s)	759
MalI	GATC	3 cut(s)	153, 396, 693
MboI	GATC	3 cut(s)	151, 394, 691
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	631
MluCI	AATT	2 cut(s)	370, 530
MluNI	TGGCCA	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	1073
MmeI	TCCRAC	2 cut(s)	179, 1047
MnlI	CCTC	5 cut(s)	437, 470, 1034, 1042, 1054
Mox20I	TGGCCA	1 cut(s)	631
MroI	TCCGGA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	631
MseI	TTAA	1 cut(s)	936
Msp20I	TGGCCA	1 cut(s)	631
MspA1I	CMGCKG	3 cut(s)	329, 641, 857
MspI	CCGG	4 cut(s)	102, 635, 811, 963
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	6 cut(s)	240, 411, 506, 618, 863, 1040
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	3 cut(s)	151, 394, 691
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	7 cut(s)	130, 414, 457, 660, 1030, 1109, 1130
NlaIV	GGNNCC	1 cut(s)	448
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	759
NspI	RCATGY	2 cut(s)	414, 1130
PasI	CCCWGGG	1 cut(s)	307
PciI	ACATGT	1 cut(s)	1126
PfeI	GAWTC	2 cut(s)	388, 998
PinAI	ACCGGT	1 cut(s)	962
PkrI	GCNGC	9 cut(s)	43, 100, 328, 331, 611, 640, 802, 868, 871
PleI	GAGTC	1 cut(s)	1072
PpsI	GAGTC	1 cut(s)	1072
PscI	ACATGT	1 cut(s)	1126
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	448
PstI	CTGCAG	2 cut(s)	100, 871
PsuI	RGATCY	1 cut(s)	394
PvuII	CAGCTG	2 cut(s)	329, 641
RsaI	GTAC	3 cut(s)	143, 313, 1104
RsaNI	GTAC	3 cut(s)	142, 312, 1103
SaqAI	TTAA	1 cut(s)	936
SatI	GCNGC	9 cut(s)	42, 99, 327, 330, 610, 639, 801, 867, 870
Sau3AI	GATC	3 cut(s)	151, 394, 691
SchI	GAGTC	1 cut(s)	1073
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	266, 367
SfcI	CTRYAG	4 cut(s)	96, 348, 741, 867
Sse9I	AATT	2 cut(s)	370, 530
SsiI	CCGC	6 cut(s)	206, 255, 398, 441, 794, 857
SspMI	CTAG	2 cut(s)	501, 863
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	3 cut(s)	585, 656, 970
TaaI	ACNGT	4 cut(s)	7, 477, 745, 765
TaiI	ACGT	1 cut(s)	1104
TaqI	TCGA	1 cut(s)	543
TasI	AATT	2 cut(s)	370, 530
TfiI	GAWTC	2 cut(s)	388, 998
Tru1I	TTAA	1 cut(s)	936
Tru9I	TTAA	1 cut(s)	936
TscAI	CASTG	6 cut(s)	278, 632, 657, 750, 768, 958
TseFI	GTSAC	1 cut(s)	759
TseI	GCWGC	9 cut(s)	41, 98, 326, 329, 609, 638, 800, 866, 869
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	5 cut(s)	32, 442, 481, 896, 990
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	6 cut(s)	278, 632, 657, 750, 768, 958
XceI	RCATGY	2 cut(s)	414, 1130
XmiI	GTMKAC	1 cut(s)	1094
XspI	CTAG	2 cut(s)	501, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.