Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

7937629 .. 7938580

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1112900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTGCAAATACCCACTGTACCCGTCTGATCCAACCGTTGCATATGGATATCGGTCCTACGCATTTCTTGTGGCCTGTTCTTTTCACCGGATTCCTGTCTGTATTTTACCCCTACAAAGGCAAATCAGTTCCATCCCGTGCTTTTCTCCAAAGCACTTTATTTGTTACTTTCTTCGTCATCACTCTGGTGCCATCGGATTAGCAGCGGCATTACTGTTATGGCCAACAATTTCAGAGCAGCAGGCACCACCACAACAACGTGTATCGAAATATCAGCGGTTGCCTTACGGCCAAAACTGGGTTTCTTGGCGGAGGAGCTTTTTTATCTCTCAGTTCGTCTCTACTGTGGTTGGCTTGCCTCATGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

124

Amino Acids

14.06

Weight (kDa)

9.72

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 244
AciI	CCGC	3 cut(s)	206, 277, 310
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	221, 289
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	117, 298, 365
AflIII	ACRYGT	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	72, 221, 289
ApeKI	GCWGC	2 cut(s)	203, 238
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	188, 244
BbvI	GCAGC	2 cut(s)	215, 250
BccI	CCATC	2 cut(s)	140, 200
BceAI	ACGGC	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	370
BisI	GCNGC	3 cut(s)	204, 207, 239
BlsI	GCNGC	3 cut(s)	205, 208, 240
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	190, 246
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 298, 365
Bse1I	ACTGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	117, 298, 365
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	215, 250
BshFI	GGCC	3 cut(s)	74, 223, 291
BshNI	GGYRCC	2 cut(s)	188, 244
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	117, 298, 365
BsmAI	GTCTC	1 cut(s)	343
BsmBI	CGTCTC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	74, 223, 291
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	206, 277, 310
BspANI	GGCC	3 cut(s)	74, 223, 291
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	190, 246
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	2 cut(s)	188, 244
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	28
Bst4CI	ACNGT	4 cut(s)	18, 37, 216, 346
BstC8I	GCNNGC	3 cut(s)	243, 356, 367
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	215, 250
BsuRI	GGCC	3 cut(s)	74, 223, 291
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	243, 356, 367
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	6 cut(s)	74, 223, 291, 318, 354, 369
CviKI_1	RGCY	6 cut(s)	74, 223, 291, 318, 354, 369
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	221, 289
EciI	GGCGGA	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	1 cut(s)	365
FaiI	YATR	4 cut(s)	43, 45, 220, 363
FatI	CATG	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	204, 207, 239
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	204, 207, 239
FspBI	CTAG	1 cut(s)	370
GluI	GCNGC	3 cut(s)	204, 207, 239
HaeIII	GGCC	3 cut(s)	74, 223, 291
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	1 cut(s)	365
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	28, 197, 235
HpyCH4III	ACNGT	4 cut(s)	18, 37, 216, 346
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	6, 41
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	7 cut(s)	88, 101, 108, 171, 227, 283, 351
Lsp1109I	GCAGC	2 cut(s)	215, 250
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	164
MlsI	TGGCCA	1 cut(s)	223
MluCI	AATT	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	2 cut(s)	306, 369
Mox20I	TGGCCA	1 cut(s)	223
MscI	TGGCCA	1 cut(s)	223
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	223
MspA1I	CMGCKG	2 cut(s)	206, 277
MspI	CCGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	2 cut(s)	190, 246
OliI	CACNNNNGTG	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	205, 208, 240
PspN4I	GGNNCC	2 cut(s)	190, 246
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	3 cut(s)	204, 207, 239
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	54
SetI	ASST	2 cut(s)	262, 320
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	3 cut(s)	206, 277, 310
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	4 cut(s)	18, 37, 216, 346
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	266
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	203, 238
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	54
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.