Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Reverse (-)

1546054 .. 1547839

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCGGTTCAACTTATATCAGATTGTTTTTGGGATTAATGTTAATAAAGAGGAACTAGTGCTTGATGGAAGTGAGGCACCAGTAAGAATTGAAGCTGAAGCTCTACTAGCATCTGAGAAACTTGCACCTGCTGCTACTCTAAGCAAGATCAGAATTCCATATCGACCAGTTGCTGCTGAACTTTGTTCTCTTCCAACAGATCGTGACAAACTACCCTCAGAAAAACGTATTTTGGCGCTGACATTAACTTACAAGTTCAAATTGGAAGATGGAGCTGAAGTAAAACCTCAAGTTCCATTACTTAACAATCGCATATATGATACTAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAACAAGCGTGTATATGCAACGGGTGAAGCTTATCCAAGCTCTTCAAAACTGCCCAAAGGCGAATACACTTTACAACTATATCTTAGCATATCTGGAAAAATTGAAGCAGCTGGTTTTGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

7.75

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPPII	PF12580	35 - 148	2.7e-41	Tripeptidyl peptidase II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	153, 326
AcuI	CTGAAG	2 cut(s)	117, 297
AgsI	TTSAA	5 cut(s)	10, 92, 259, 405, 464
AhlI	ACTAGT	1 cut(s)	55
AluBI	AGCT	6 cut(s)	95, 101, 275, 389, 399, 470
AluI	AGCT	6 cut(s)	95, 101, 275, 389, 399, 470
Alw26I	GTCTC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	131, 173, 467
ApoI	RAATTY	2 cut(s)	153, 326
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	118, 160, 479
BccI	CCATC	2 cut(s)	59, 263
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 107
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	132, 174, 468
BlsI	GCNGC	3 cut(s)	133, 175, 469
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	119, 346
BpuEI	CTTGAG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse1I	ACTGG	2 cut(s)	80, 167
BseMII	CTCAG	3 cut(s)	105, 231, 350
BseNI	ACTGG	2 cut(s)	80, 167
BseXI	GCAGC	3 cut(s)	118, 160, 479
BshNI	GGYRCC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	147, 199, 348
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	3 cut(s)	106, 230, 349
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	80, 167
BssMI	GATC	3 cut(s)	147, 199, 348
Bst6I	CTCTTC	2 cut(s)	195, 406
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstDEI	CTNAG	5 cut(s)	114, 140, 217, 336, 443
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	3 cut(s)	150, 202, 351
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	147, 199, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 131
BstV1I	GCAGC	3 cut(s)	118, 160, 479
BveI	ACCTGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	238
CviJI	RGCY	6 cut(s)	95, 101, 275, 389, 399, 470
CviKI_1	RGCY	6 cut(s)	95, 101, 275, 389, 399, 470
DdeI	CTNAG	5 cut(s)	114, 140, 217, 336, 443
DpnI	GATC	3 cut(s)	149, 201, 350
DpnII	GATC	3 cut(s)	147, 199, 348
Eam1104I	CTCTTC	2 cut(s)	195, 406
EarI	CTCTTC	2 cut(s)	195, 406
Eco57I	CTGAAG	2 cut(s)	117, 297
EcoRI	GAATTC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	132, 174, 468
Fsp4HI	GCNGC	3 cut(s)	132, 174, 468
FspBI	CTAG	2 cut(s)	56, 107
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	3 cut(s)	132, 174, 468
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	5 cut(s)	21, 115, 152, 220, 355
Hpy188III	TCNNGA	2 cut(s)	203, 453
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	125, 359, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 131
HpyF3I	CTNAG	5 cut(s)	114, 140, 217, 336, 443
HpySE526I	ACGT	1 cut(s)	226
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	147, 199, 348
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	5 cut(s)	93, 141, 180, 438, 456
Lsp1109I	GCAGC	3 cut(s)	118, 160, 479
LweI	GCATC	2 cut(s)	119, 346
MaeI	CTAG	2 cut(s)	56, 107
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	149, 201, 350
MboI	GATC	3 cut(s)	147, 199, 348
MboII	GAAGA	3 cut(s)	182, 278, 393
MluCI	AATT	5 cut(s)	87, 153, 260, 326, 459
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	4 cut(s)	43, 67, 226, 297
MseI	TTAA	4 cut(s)	36, 42, 245, 303
MspA1I	CMGCKG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	107, 131
NdeII	GATC	3 cut(s)	147, 199, 348
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	133, 175, 469
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	173
PvuII	CAGCTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	36, 42, 245, 303
SatI	GCNGC	3 cut(s)	132, 174, 468
Sau3AI	GATC	3 cut(s)	147, 199, 348
SchI	GAGTC	1 cut(s)	341
SetI	ASST	9 cut(s)	97, 103, 130, 229, 277, 289, 391, 401, 472
SfaNI	GCATC	2 cut(s)	119, 346
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	5 cut(s)	87, 153, 260, 326, 459
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	56, 107
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	163
TasI	AATT	5 cut(s)	87, 153, 260, 326, 459
Tru1I	TTAA	4 cut(s)	36, 42, 245, 303
Tru9I	TTAA	4 cut(s)	36, 42, 245, 303
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	131, 173, 467
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	153, 326
XspI	CTAG	2 cut(s)	56, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.