Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Forward (+)

55658760 .. 55685751

Gene Structure 26992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG414600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGGAGGCAATCTAAATCTTCTGCTACTAGTTCAGGTGCTAATCCGAAATCAACTTCTTCATCTCAGTATGTGTTTTGTGCACCAAAACTACAGTTTCTTTTTGGGATTAATGTTAATAAAGAGGAACTAGTGCTTGATGGAAGTGAGGCACCAGTAAGAATTGAAGCTGAAGCTCTACTAGCATCCGAGAAACTTGCACCTGCTGCTACTCTAAGCAAGATCAGAATTCCATATCGACCAGTTGCTGCTGAACTTTGTTCTCTTCCAACAGATCGTGACAAACTACCCTCAGAAAAACGTATTTTGGCGCTGACATTAACTTACAAGTTCAAATTGGAAGATGGAGCTGAAGTAAAACCTCAAGTTCCATTACTTAACAATCGCATATATGATACTAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAACAAGCGTGTATATGCAACGGGTGAAGCTTATCCAAGCTCTTCAAAACTGCCCAAAGGCGAATACACTTTACAGCTATATCTTAGAAATTATATGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

9.33

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPPII	PF12580	60 - 175	9e-42	Tripeptidyl peptidase II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	228, 401
AcuI	CTGAAG	2 cut(s)	192, 372
AgsI	TTSAA	3 cut(s)	167, 334, 480
AhlI	ACTAGT	2 cut(s)	29, 130
AluBI	AGCT	6 cut(s)	170, 176, 350, 464, 474, 511
AluI	AGCT	6 cut(s)	170, 176, 350, 464, 474, 511
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	248
ApaLI	GTGCAC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	206, 248
ApoI	RAATTY	2 cut(s)	228, 401
AseI	ATTAAT	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	193, 235
BccI	CCATC	2 cut(s)	134, 338
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcoDI	GTCTC	1 cut(s)	414
BcuI	ACTAGT	2 cut(s)	29, 130
BfaI	CTAG	3 cut(s)	30, 131, 182
BfmI	CTRYAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	207, 249
BlsI	GCNGC	2 cut(s)	208, 250
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	2 cut(s)	194, 421
BpuEI	CTTGAG	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse1I	ACTGG	2 cut(s)	155, 242
BseGI	GGATG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	80, 306, 425
BseNI	ACTGG	2 cut(s)	155, 242
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	193, 235
BshNI	GGYRCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	222, 274, 423
BspCNI	CTCAG	3 cut(s)	79, 305, 424
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	155, 242
BssMI	GATC	3 cut(s)	222, 274, 423
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	270, 481
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstDEI	CTNAG	5 cut(s)	66, 215, 292, 411, 518
BstF5I	GGATG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	225, 277, 426
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	3 cut(s)	222, 274, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 206
BstSFI	CTRYAG	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	193, 235
BtsCI	GGATG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	313
CviJI	RGCY	6 cut(s)	170, 176, 350, 464, 474, 511
CviKI_1	RGCY	6 cut(s)	170, 176, 350, 464, 474, 511
DdeI	CTNAG	5 cut(s)	66, 215, 292, 411, 518
DpnI	GATC	3 cut(s)	224, 276, 425
DpnII	GATC	3 cut(s)	222, 274, 423
Eam1104I	CTCTTC	2 cut(s)	270, 481
EarI	CTCTTC	2 cut(s)	270, 481
Eco57I	CTGAAG	2 cut(s)	192, 372
EcoRI	GAATTC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	207, 249
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	207, 249
FspBI	CTAG	3 cut(s)	30, 131, 182
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	2 cut(s)	207, 249
HaeII	RGCGCY	1 cut(s)	314
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	462
HinfI	GANTC	1 cut(s)	407
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	5 cut(s)	48, 190, 227, 295, 430
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	83, 200, 434, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 206
HpyF3I	CTNAG	5 cut(s)	66, 215, 292, 411, 518
HpySE526I	ACGT	1 cut(s)	301
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	3 cut(s)	222, 274, 423
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	21, 168, 216, 255
Lsp1109I	GCAGC	2 cut(s)	193, 235
LweI	GCATC	2 cut(s)	194, 421
MaeI	CTAG	3 cut(s)	30, 131, 182
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	224, 276, 425
MboI	GATC	3 cut(s)	222, 274, 423
MboII	GAAGA	5 cut(s)	12, 51, 257, 353, 468
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	5 cut(s)	162, 228, 335, 401, 523
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	118, 142, 301, 372
MseI	TTAA	4 cut(s)	111, 117, 320, 378
MwoI	GCNNNNNNNGC	2 cut(s)	182, 206
NdeII	GATC	3 cut(s)	222, 274, 423
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	208, 250
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	111, 117, 320, 378
SatI	GCNGC	2 cut(s)	207, 249
Sau3AI	GATC	3 cut(s)	222, 274, 423
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	194, 421
SfcI	CTRYAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SpeI	ACTAGT	2 cut(s)	29, 130
Sse9I	AATT	5 cut(s)	162, 228, 335, 401, 523
SspMI	CTAG	3 cut(s)	30, 131, 182
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	238
TasI	AATT	5 cut(s)	162, 228, 335, 401, 523
Tru1I	TTAA	4 cut(s)	111, 117, 320, 378
Tru9I	TTAA	4 cut(s)	111, 117, 320, 378
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	206, 248
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	81
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	2 cut(s)	228, 401
XspI	CTAG	3 cut(s)	30, 131, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.