Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008363.1

Orthogroup ID

OG0002236

Physical Location & Seq

Genomic Coordinates Forward (+)

138712 .. 139891

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008363.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaataatcctcatcaatcggtccagattcttgttgctaagcaacgcgccaaagaagcagcattggcggagattcccaaatcctctctcttttctttctatatagaatcgactcaagacgacccctttttatcccgattcaatttccccagggcgatggctgtgacggtgaagcagatggctatgatagtggccttttttggtgtactgtctttcatcttcgggattattgcggaaaacaagaagccggcagctggaaaaccagtgccgtggaaagatgttgttatttgcaagtatccttctgatccttcggtggcgttgggatatctgtcatttgcatttctccttgtatctacagtggttgggttcttgtcactgttttacccatatcaagggaagtcccttcctcaagctgctttgttccggagcaagagtttcgttgtcttcttcaacatttccttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

9.68

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31130
fragaria_vesca	FvH4_2g30590 FvH4_2g30600 FvH4_2g30600 FvH4_2g30600
malus_domestica	MD08G1132500.v1.1 MD08G1132600.v1.1 MD15G1112800.v1.1 MD15G1112900.v1.1
prunus_persica	Prupe.1G463400_v2.0.a1
pyrus_communis	pycom08g11170 pycom08g11180 pycom15g10140
rosa_chinensis	RchiOBHm_Chr5g0063261 RchiOBHm_Chr5g0063271 RchiOBHm_Chr6g0312401 RchiOBHm_Chr6g0312411
rosa_laevigata	RLG00000010330 RLG00000035617
rosa_multiflora	Rmu_sc0005045.1_g000018 Rmu_sc0008363.1_g000024
rosa_roxburghii	Rroxscaffold_1G00017440 Rroxscaffold_6G00391270 Rroxscaffold_7G00156830
rosa_rugosa	Rorug05G0355700 Rorug06G0395500 Rorug06G0395500 Rorug06G0395500
rosa_samantha	Rh2CG573400 Rh5AG022300 Rh5AG415400 Rh5BG430200 Rh5CG453700 Rh5DG443800 Rh6AG512800 Rh6AG512900 Rh6BG523700 Rh6CG529100 Rh6DG515000 Rh7AG414600
rosa_wichuraiana	Rw5G039040 Rw6G044570 Rw6G044580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	423
AciI	CCGC	2 cut(s)	68, 233
AclWI	GGATC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	254, 392
AgsI	TTSAA	2 cut(s)	142, 451
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	254, 413
AluI	AGCT	2 cut(s)	254, 413
AlwI	GGATC	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	59, 251, 413
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	71, 263, 400
BccI	CCATC	2 cut(s)	151, 172
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	60, 252, 414
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	3 cut(s)	61, 253, 415
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	99, 393
BsaJI	CCNNGG	3 cut(s)	149, 150, 269
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 392
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	149, 150, 269
BseLI	CCNNNNNNNGG	2 cut(s)	254, 392
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	71, 263, 400
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	248, 424
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	254, 392
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	68, 233
BspANI	GGCC	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	149, 150, 269
BssMI	GATC	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	4 cut(s)	169, 210, 358, 378
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 65
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	71, 263, 400
BstV2I	GAAGAC	1 cut(s)	436
BstXI	CCANNNNNNTGG	2 cut(s)	157, 270
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	170
BtsIMutI	CAGTG	3 cut(s)	270, 363, 374
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	206
CviJI	RGCY	6 cut(s)	161, 182, 194, 247, 254, 413
CviKI_1	RGCY	6 cut(s)	161, 182, 194, 247, 254, 413
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	326
FaiI	YATR	4 cut(s)	102, 104, 185, 388
FaqI	GGGAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	60, 252, 414
Fsp4HI	GCNGC	3 cut(s)	60, 252, 414
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	60, 252, 414
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	248, 424
HhaI	GCGC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	5 cut(s)	28, 73, 107, 112, 138
HpaII	CCGG	2 cut(s)	248, 424
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	5 cut(s)	25, 116, 135, 223, 424
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	309, 318, 413
HpyCH4III	ACNGT	4 cut(s)	169, 210, 358, 378
HpyCH4V	TGCA	2 cut(s)	291, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 65
HpyF3I	CTNAG	1 cut(s)	39
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	423
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	7 cut(s)	38, 136, 163, 240, 261, 276, 437
Lsp1109I	GCAGC	3 cut(s)	71, 263, 400
MaeIII	GTNAC	2 cut(s)	163, 372
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	211, 436, 439
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	21, 94, 417
MroI	TCCGGA	1 cut(s)	423
MroNI	GCCGGC	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	248, 424
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	56, 65
NaeI	GCCGGC	1 cut(s)	249
NdeII	GATC	1 cut(s)	304
NgoMIV	GCCGGC	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	163, 372
PasI	CCCWGGG	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	28, 73, 107, 138
PkrI	GCNGC	3 cut(s)	61, 253, 415
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SatI	GCNGC	3 cut(s)	60, 252, 414
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	2 cut(s)	256, 415
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	114, 408
SmoI	CTYRAG	2 cut(s)	114, 408
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	68, 233
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	4 cut(s)	169, 210, 358, 378
TaqI	TCGA	1 cut(s)	110
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	142
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	4 cut(s)	28, 73, 107, 138
TscAI	CASTG	3 cut(s)	270, 363, 381
TseFI	GTSAC	2 cut(s)	163, 372
TseI	GCWGC	3 cut(s)	59, 251, 413
Tsp45I	GTSAC	2 cut(s)	163, 372
TspDTI	ATGAA	2 cut(s)	17, 205
TspRI	CASTG	3 cut(s)	270, 363, 381
VpaK11BI	GGWCC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.