FvH4_2g30600

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002236
Physical Location & Seq
Forward (+)
23662601 .. 23665182
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30600.t2

Sequence Viewer

Length: 603 bp
ATGGCTGTGACGGTGAGGCAGATGGCTTTGATAGTGGGTGTCTTTGGTGTGCTGTCTTTTGTTTTCGGGATTATTGCGGAAAACAAGAAGCCTGCATCTGGAACTCCATTGCCAGGGAAAGATGTTGTTGTTTGCAAGTATCCTTCTGATCCTTCGGTTGCCTTGGGATATCTGTCATTTGCATTTCTCCTTGTGTCTACAGTGGTCGGGTTCTTGTCATTGTTTTACCCATATCAAGGGAAGTCCCTTCCACAAGCTGCTTTGTTCCGGAGCAAGAGTTTCGTCGTGTTCTTCAACATTTCTTTGCTTACAGCAGGACTAGCTGCAGCTCTGTTGCTATGGACTACAATAACGGAGCAACTGCATCTATCACGAAATGTTCATCACAATATTGAAACAACGTGCCCCACTGCTAAGACCGGTCTCCTTGGTGGCGGTGCTTTTGTATCCCTTGATTCATCCCTTTTCTGGCTGGTTGCTCTCATGTTGGCCGACAATGCCCGAGAGGACTACTTTGAGGATTTGGATAAGGATGTCAAGGGTGGTGGTTTTGCAGAGGTGCATGGAGCTGATTATGGAAATGTTATAAAAGGCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

201

Amino Acids

21.36

Weight (kDa)

6.4

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 59 - 154 5.1e-18 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
AccI GTMKAC 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 2 cut(s) 77, 435
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 489
AfiI CCNNNNNNNGG 4 cut(s) 98, 113, 236, 468
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 2 cut(s) 295, 395
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 4 cut(s) 257, 323, 329, 569
AluI AGCT 4 cut(s) 257, 323, 329, 569
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 501
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 3 cut(s) 257, 323, 326
AsiGI ACCGGT 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 244, 310, 338
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 2 cut(s) 150, 457
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 2 cut(s) 198, 324
BfuI GTATCC 2 cut(s) 150, 457
BisI GCNGC 3 cut(s) 258, 324, 327
BlsI GCNGC 3 cut(s) 259, 325, 328
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 104, 373
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 113, 162, 427
BsaWI WCCGGW 2 cut(s) 267, 419
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 113, 236, 468
Bse118I RCCGGY 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 113, 162, 427
BseGI GGATG 2 cut(s) 458, 538
BseLI CCNNNNNNNGG 4 cut(s) 98, 113, 236, 468
BseMI GCAATG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 3 cut(s) 244, 310, 338
BshFI GGCC 1 cut(s) 491
BshTI ACCGGT 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 2 cut(s) 268, 420
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 4 cut(s) 98, 113, 236, 468
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 491
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 407
Bsp13I TCCGGA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 77, 435
BspANI GGCC 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 113, 162, 427
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 162, 427
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 13, 202
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 458, 538
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 320, 497
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 198, 324
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 244, 310, 338
BsuI GTATCC 2 cut(s) 150, 457
BsuRI GGCC 1 cut(s) 491
BtsCI GGATG 2 cut(s) 458, 538
BtsI GCAGTG 2 cut(s) 408, 601
BtsIMutI CAGTG 3 cut(s) 207, 408, 601
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 419
CspAI ACCGGT 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 2 cut(s) 484, 563
CviJI RGCY 9 cut(s) 5, 26, 91, 257, 323, 329, 472, 491, 569
CviKI_1 RGCY 9 cut(s) 5, 26, 91, 257, 323, 329, 472, 491, 569
DdeI CTNAG 1 cut(s) 414
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 489
Eco130I CCWWGG 2 cut(s) 162, 427
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 162, 427
ErhI CCWWGG 2 cut(s) 162, 427
FaeI CATG 2 cut(s) 487, 566
FaiI YATR 6 cut(s) 232, 340, 485, 564, 576, 587
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 483, 562
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 3 cut(s) 258, 324, 327
FokI GGATG 2 cut(s) 445, 545
Fsp4HI GCNGC 3 cut(s) 258, 324, 327
FspBI CTAG 1 cut(s) 320
GluI GCNGC 3 cut(s) 258, 324, 327
HaeIII GGCC 1 cut(s) 491
HapII CCGG 2 cut(s) 268, 420
Hin1II CATG 2 cut(s) 487, 566
HinfI GANTC 1 cut(s) 455
HpaII CCGG 2 cut(s) 268, 420
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 4 cut(s) 67, 99, 268, 372
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 153, 162, 257
HpyCH4III ACNGT 2 cut(s) 13, 202
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 7 cut(s) 95, 135, 182, 326, 364, 554, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 497
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 2 cut(s) 487, 566
Kpn2I TCCGGA 1 cut(s) 267
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 3 cut(s) 270, 355, 566
LpnPI CCDG 9 cut(s) 84, 99, 105, 126, 281, 300, 433, 454, 458
Lsp1109I GCAGC 3 cut(s) 244, 310, 338
LweI GCATC 2 cut(s) 104, 373
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 407
MnlI CCTC 4 cut(s) 9, 499, 511, 550
MroI TCCGGA 1 cut(s) 267
MspI CCGG 2 cut(s) 268, 420
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 320, 497
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 487, 566
NmuCI GTSAC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 3 cut(s) 259, 325, 328
PsiI TTATAA 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PstI CTGCAG 1 cut(s) 328
SatI GCNGC 3 cut(s) 258, 324, 327
Sau3AI GATC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 407
SetI ASST 6 cut(s) 259, 325, 331, 404, 561, 571
SfaNI GCATC 2 cut(s) 104, 373
SfcI CTRYAG 2 cut(s) 198, 324
SsiI CCGC 2 cut(s) 77, 435
SspI AATATT 1 cut(s) 391
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 162, 427
TaaI ACNGT 2 cut(s) 13, 202
TaiI ACGT 1 cut(s) 404
TfiI GAWTC 1 cut(s) 455
TscAI CASTG 3 cut(s) 207, 415, 601
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 257, 323, 326
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 371, 447
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 3 cut(s) 207, 415, 601
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.