Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

27315082 .. 27318130

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37520.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATGTACTCCTTGACGGTGAAGCCCTCTCTTCTTCTTGTACAAAAATCTTCTTCACCTGCTCACTCTTGGGTTGGGTCCTCTTCTTCTTCTACGGTTAGTTTCCCAGTAAAAACGAAAACCAGAGGCAGAAGAATCAGTTTGAGACTTGAGGCTTATGATTCTTCCAAGAACAACGATGGGCTTAATGCCTCCTCCGGTGATTCTAAACCTCCCAACAGCACTCTGCCGAAAAGTAGGAGGGACATTTTGTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTCGATGCAATGCGCCAAACTGTGACAAACATGATTGGTACACTACCCCCACAATTTTTTTCAGTCACAGTTTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTACAGCAAAGTTTAGAGCCGGTTGCCCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGATTATGCACCTGGTACACAGAAGAAGAATGTGTCAGGTGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCAAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTAAATCAGGAAGTTGGTAGGAAATCTGCTAATGGACAAAATGAATTGCTGGAGTATCTCAAGTCTCTTGAGCCCCAAAATTTAAAGGAGTTAACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGCTGCCACTGGGGGCAGTGGGGTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

292

Amino Acids

32.25

Weight (kDa)

6.06

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	84 - 140	2.7e-10	Protein of unknown function (DUF760)
DUF760	PF05542	214 - 297	3.5e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	67, 307
Acc36I	ACCTGC	2 cut(s)	67, 307
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	1 cut(s)	811
AclWI	GGATC	1 cut(s)	824
AcsI	RAATTY	2 cut(s)	281, 745
AfaI	GTAC	8 cut(s)	8, 42, 361, 428, 470, 556, 635, 766
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	458, 650
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	2 cut(s)	292, 847
AluI	AGCT	2 cut(s)	292, 847
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	139, 735, 768
AlwI	GGATC	1 cut(s)	824
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	2 cut(s)	274, 847
ApoI	RAATTY	2 cut(s)	281, 745
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	78, 608
AsuHPI	GGTGA	4 cut(s)	31, 48, 212, 590
AvaII	GGWCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	286, 834
BccI	CCATC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	139, 735, 768
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	2 cut(s)	762, 834
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	2 cut(s)	67, 307
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	3 cut(s)	275, 812, 848
BlsI	GCNGC	3 cut(s)	276, 813, 849
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	78, 608
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	2 cut(s)	101, 863
BmsI	GCATC	3 cut(s)	316, 523, 613
BmuI	ACTGGG	2 cut(s)	101, 863
BpmI	CTGGAG	2 cut(s)	737, 792
BpuEI	CTTGAG	3 cut(s)	170, 710, 755
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	3 cut(s)	107, 448, 858
Bse3DI	GCAATG	2 cut(s)	336, 798
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	2 cut(s)	336, 798
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	3 cut(s)	107, 448, 858
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	286, 834
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	198, 500
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	3 cut(s)	139, 735, 768
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	310, 741
Bsp1407I	TGTACA	2 cut(s)	40, 426
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	1 cut(s)	811
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	2 cut(s)	67, 307
BspPI	GGATC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	336, 798
BsrFI	RCCGGY	1 cut(s)	499
BsrGI	TGTACA	2 cut(s)	40, 426
BsrI	ACTGG	3 cut(s)	107, 448, 858
BssAI	RCCGGY	1 cut(s)	499
BssMI	GATC	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	7 cut(s)	19, 97, 343, 391, 400, 431, 468
Bst6I	CTCTTC	2 cut(s)	36, 88
BstAUI	TGTACA	2 cut(s)	40, 426
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	3 cut(s)	139, 735, 768
BstMBI	GATC	1 cut(s)	829
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	286, 834
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	2 cut(s)	851, 867
BveI	ACCTGC	2 cut(s)	67, 307
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	78, 608
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	8 cut(s)	7, 41, 360, 427, 469, 555, 634, 765
CviAII	CATG	2 cut(s)	352, 436
CviQI	GTAC	8 cut(s)	7, 41, 360, 427, 469, 555, 634, 765
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
DraI	TTTAAA	1 cut(s)	750
Eam1104I	CTCTTC	2 cut(s)	36, 88
EarI	CTCTTC	2 cut(s)	36, 88
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	2 cut(s)	355, 439
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	351, 435
Fnu4HI	GCNGC	3 cut(s)	275, 812, 848
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	3 cut(s)	275, 812, 848
FspBI	CTAG	2 cut(s)	762, 834
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	275, 812, 848
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	2 cut(s)	737, 792
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	198, 500
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	355, 439
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	3 cut(s)	135, 161, 203
HpaI	GTTAAC	1 cut(s)	759
HpaII	CCGG	2 cut(s)	198, 500
HphI	GGTGA	4 cut(s)	31, 48, 212, 590
Hpy166II	GTNNAC	3 cut(s)	362, 557, 759
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	4 cut(s)	436, 512, 674, 734
Hpy8I	GTNNAC	3 cut(s)	362, 557, 759
HpyAV	CCTTC	2 cut(s)	509, 518
HpyCH4III	ACNGT	7 cut(s)	19, 97, 343, 391, 400, 431, 468
HpyCH4V	TGCA	8 cut(s)	274, 329, 416, 464, 536, 548, 626, 791
HpyF3I	CTNAG	1 cut(s)	612
Hsp92II	CATG	2 cut(s)	355, 439
HspAI	GCGC	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	759
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	2 cut(s)	286, 834
LweI	GCATC	3 cut(s)	316, 523, 613
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	2 cut(s)	762, 834
MaeIII	GTNAC	3 cut(s)	343, 385, 642
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	310, 741
MluCI	AATT	5 cut(s)	281, 374, 665, 710, 745
MmeI	TCCRAC	3 cut(s)	234, 456, 849
MnlI	CCTC	9 cut(s)	37, 91, 119, 145, 202, 205, 222, 234, 655
MseI	TTAA	4 cut(s)	186, 668, 749, 758
MspI	CCGG	2 cut(s)	198, 500
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	2 cut(s)	355, 439
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	343, 385
PagI	TCATGA	1 cut(s)	435
PaqCI	CACCTGC	2 cut(s)	67, 307
PfeI	GAWTC	3 cut(s)	135, 161, 203
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	276, 813, 849
PpuMI	RGGWCCY	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	78, 608
PspPPI	RGGWCCY	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	8 cut(s)	8, 42, 361, 428, 470, 556, 635, 766
RsaNI	GTAC	8 cut(s)	7, 41, 360, 427, 469, 555, 634, 765
SaqAI	TTAA	4 cut(s)	186, 668, 749, 758
SatI	GCNGC	3 cut(s)	275, 812, 848
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	2 cut(s)	78, 608
ScaI	AGTACT	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	2 cut(s)	310, 741
SetI	ASST	9 cut(s)	61, 214, 294, 321, 476, 553, 580, 593, 849
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	316, 523, 613
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	149, 725, 734
SmoI	CTYRAG	3 cut(s)	149, 725, 734
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	5 cut(s)	281, 374, 665, 710, 745
SsiI	CCGC	1 cut(s)	811
SspMI	CTAG	2 cut(s)	762, 834
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	7 cut(s)	19, 97, 343, 391, 400, 431, 468
TaqI	TCGA	1 cut(s)	324
TasI	AATT	5 cut(s)	281, 374, 665, 710, 745
TatI	WGTACW	6 cut(s)	6, 40, 426, 468, 633, 764
TauI	GCSGC	1 cut(s)	814
TfiI	GAWTC	3 cut(s)	135, 161, 203
Tru1I	TTAA	4 cut(s)	186, 668, 749, 758
Tru9I	TTAA	4 cut(s)	186, 668, 749, 758
TscAI	CASTG	2 cut(s)	858, 867
TseFI	GTSAC	2 cut(s)	343, 385
TseI	GCWGC	2 cut(s)	274, 847
Tsp45I	GTSAC	2 cut(s)	343, 385
TspDTI	ATGAA	3 cut(s)	723, 793, 857
TspRI	CASTG	2 cut(s)	858, 867
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	281, 745
XspI	CTAG	2 cut(s)	762, 834
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.