Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

60674 .. 63367

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgtattccttgacggtgaagccctcttttcttcttgtaccaaaatcatcttcttcttcatctgctcattctagggttgcgtcttcttcttctacggttagtttccgaataaagaccaaaagcaggggcagcagaatcagtttgagaattgcggcttacgattcttccaagaacaaagatgggctcaactccggtgattccaaacctcccaacggcactctgccaaagagcaggagggatatactattggagtatgtaaaaaatgtgcagcctgaatttatggagctgtttgtaaagagagcaccccagcaggtggttgatgcaatgcgccaaactgtgacaaacatgattggaacactacccccacaattttttacagtcacagtgtccaccgttgccgaaaatcttgcacaacttatgtacagtatcatgatgactggatatatgtttcaaaatgcacagtacaggttggaactgcagcaaagtttagagccagttgctcttcctgaagggcaagagaaaaaggatgcaccagagtatgcacctggtacacagaagacgaatgtgtcaggggaagttattaggtggaataaggtttctggccctgagaaaatagatgctaagaagtacatagagttacttgaagcagagattgaggaattgaataatgaagttggtaggaaatctgcaaatggacaaaatgaattgttggagtatctcaagtctctcgagccccaaaatttaaaggagttgactagtactgctggagacgatgttgtggttgcaatggatacattcatcaagcggcttttggctgtttcagatcctagccaaatgaaggctagtgtaacatcaacaactgcaccagaacttgcaaagctgctttattggctaatggtagtcggatatagtcttcgcaacattgaagttcgttttgatatggaacgagtacttgggaatcctccaaagctcgcagaattgcctccaggtgaaaatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

333

Amino Acids

36.97

Weight (kDa)

8.48

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
AasI	GACNNNNNNGTC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	2 cut(s)	152, 805
AclWI	GGATC	1 cut(s)	818
AcsI	RAATTY	2 cut(s)	275, 739
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	7 cut(s)	39, 422, 464, 550, 629, 760, 951
AfiI	CCNNNNNNNGG	4 cut(s)	123, 212, 313, 838
AgsI	TTSAA	4 cut(s)	452, 644, 664, 926
AhlI	ACTAGT	1 cut(s)	755
AjnI	CCWGG	2 cut(s)	544, 985
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 936, 968
AluBI	AGCT	3 cut(s)	286, 880, 970
AluI	AGCT	3 cut(s)	286, 880, 970
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	729, 762
AlwI	GGATC	1 cut(s)	818
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	4 cut(s)	129, 268, 478, 880
ApoI	RAATTY	2 cut(s)	275, 739
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	3 cut(s)	28, 206, 1001
AvaI	CYCGRG	1 cut(s)	728
BanII	GRGCYC	2 cut(s)	186, 735
BbsI	GAAGAC	3 cut(s)	75, 563, 905
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	141, 280, 490, 867
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	546, 987
BciVI	GTATCC	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	729, 762
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	4 cut(s)	72, 756, 828, 843
BfmI	CTRYAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	784
BisI	GCNGC	6 cut(s)	130, 153, 269, 479, 806, 881
BlsI	GCNGC	6 cut(s)	131, 154, 270, 480, 807, 882
BmcAI	AGTACT	2 cut(s)	760, 951
Bme1390I	CCNGG	2 cut(s)	546, 987
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	546, 987
BmsI	GCATC	3 cut(s)	310, 517, 607
BpiI	GAAGAC	3 cut(s)	75, 563, 905
BpmI	CTGGAG	2 cut(s)	786, 969
BpuEI	CTTGAG	1 cut(s)	704
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 212, 313, 838
Bse1I	ACTGG	2 cut(s)	442, 494
Bse3DI	GCAATG	2 cut(s)	330, 792
BseBI	CCWGG	2 cut(s)	546, 987
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	4 cut(s)	123, 212, 313, 838
BseMI	GCAATG	2 cut(s)	330, 792
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	2 cut(s)	442, 494
BseXI	GCAGC	4 cut(s)	141, 280, 490, 867
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	287, 846
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	4 cut(s)	123, 212, 313, 838
BsmAI	GTCTC	2 cut(s)	729, 762
BsmBI	CGTCTC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	728
Bsp1286I	GDGCHC	3 cut(s)	186, 304, 735
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	823
BspACI	CCGC	2 cut(s)	152, 805
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	818
BspQI	GCTCTTC	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	330, 792
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	442, 494
BssMI	GATC	1 cut(s)	823
Bst2UI	CCWGG	2 cut(s)	546, 987
Bst4CI	ACNGT	8 cut(s)	16, 97, 337, 379, 385, 394, 425, 462
Bst6I	CTCTTC	1 cut(s)	507
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	2 cut(s)	606, 621
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	826
BstMAI	GTCTC	2 cut(s)	729, 762
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 889
BstNI	CCWGG	2 cut(s)	546, 987
BstSCI	CCNGG	2 cut(s)	544, 985
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	4 cut(s)	141, 280, 490, 867
BstV2I	GAAGAC	3 cut(s)	75, 563, 905
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	972
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	7 cut(s)	38, 421, 463, 549, 628, 759, 950
CviAII	CATG	2 cut(s)	346, 430
CviQI	GTAC	7 cut(s)	38, 421, 463, 549, 628, 759, 950
DdeI	CTNAG	2 cut(s)	606, 621
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
DraI	TTTAAA	1 cut(s)	744
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco24I	GRGCYC	2 cut(s)	186, 735
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	544, 985
EcoT38I	GRGCYC	2 cut(s)	186, 735
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	2 cut(s)	349, 433
FatI	CATG	2 cut(s)	345, 429
Fnu4HI	GCNGC	6 cut(s)	130, 153, 269, 479, 806, 881
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	2 cut(s)	186, 735
Fsp4HI	GCNGC	6 cut(s)	130, 153, 269, 479, 806, 881
FspBI	CTAG	4 cut(s)	72, 756, 828, 843
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	6 cut(s)	130, 153, 269, 479, 806, 881
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	786, 969
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	349, 433
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	4 cut(s)	135, 161, 197, 958
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	28, 206, 1001
Hpy166II	GTNNAC	3 cut(s)	390, 551, 753
Hpy188I	TCNGA	3 cut(s)	107, 823, 905
Hpy188III	TCNNGA	3 cut(s)	430, 506, 728
Hpy8I	GTNNAC	3 cut(s)	390, 551, 753
HpyAV	CCTTC	2 cut(s)	503, 832
HpyCH4III	ACNGT	8 cut(s)	16, 97, 337, 379, 385, 394, 425, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 889
HpyF3I	CTNAG	2 cut(s)	606, 621
Hsp92II	CATG	2 cut(s)	349, 433
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	823
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	4 cut(s)	141, 280, 490, 867
LweI	GCATC	3 cut(s)	310, 517, 607
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	4 cut(s)	72, 756, 828, 843
MaeIII	GTNAC	4 cut(s)	337, 379, 636, 847
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	186, 304, 735
MluCI	AATT	7 cut(s)	147, 275, 368, 659, 704, 739, 977
MmeI	TCCRAC	3 cut(s)	450, 690, 883
MnlI	CCTC	6 cut(s)	34, 216, 228, 649, 972, 993
MseI	TTAA	2 cut(s)	743, 1000
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	546, 987
MvaI	CCWGG	2 cut(s)	546, 987
MwoI	GCNNNNNNNGC	2 cut(s)	129, 889
NdeII	GATC	1 cut(s)	823
NlaIII	CATG	2 cut(s)	349, 433
NmuCI	GTSAC	2 cut(s)	337, 379
PaeR7I	CTCGAG	1 cut(s)	728
PagI	TCATGA	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	507
PfeI	GAWTC	4 cut(s)	135, 161, 197, 958
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	6 cut(s)	131, 154, 270, 480, 807, 882
Psp6I	CCWGG	2 cut(s)	544, 985
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	2 cut(s)	544, 985
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	7 cut(s)	39, 422, 464, 550, 629, 760, 951
RsaNI	GTAC	7 cut(s)	38, 421, 463, 549, 628, 759, 950
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	743, 1000
SatI	GCNGC	6 cut(s)	130, 153, 269, 479, 806, 881
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	2 cut(s)	760, 951
ScrFI	CCNGG	2 cut(s)	546, 987
SduI	GDGCHC	3 cut(s)	186, 304, 735
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	310, 517, 607
SfcI	CTRYAG	1 cut(s)	476
Sfr274I	CTCGAG	1 cut(s)	728
SlaI	CTCGAG	1 cut(s)	728
SmlI	CTYRAG	2 cut(s)	719, 728
SmoI	CTYRAG	2 cut(s)	719, 728
SpeI	ACTAGT	1 cut(s)	755
Sse9I	AATT	7 cut(s)	147, 275, 368, 659, 704, 739, 977
SsiI	CCGC	2 cut(s)	152, 805
SspMI	CTAG	4 cut(s)	72, 756, 828, 843
StyD4I	CCNGG	2 cut(s)	544, 985
TaaI	ACNGT	8 cut(s)	16, 97, 337, 379, 385, 394, 425, 462
TaqI	TCGA	1 cut(s)	729
TasI	AATT	7 cut(s)	147, 275, 368, 659, 704, 739, 977
TatI	WGTACW	5 cut(s)	420, 462, 627, 758, 949
TauI	GCSGC	2 cut(s)	155, 808
TfiI	GAWTC	4 cut(s)	135, 161, 197, 958
Tru1I	TTAA	2 cut(s)	743, 1000
Tru9I	TTAA	2 cut(s)	743, 1000
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	337, 379
TseI	GCWGC	4 cut(s)	129, 268, 478, 880
Tsp45I	GTSAC	2 cut(s)	337, 379
TspDTI	ATGAA	5 cut(s)	48, 684, 717, 787, 851
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	2 cut(s)	275, 739
XhoI	CTCGAG	1 cut(s)	728
XspI	CTAG	4 cut(s)	72, 756, 828, 843
ZrmI	AGTACT	2 cut(s)	760, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.