Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

61765485 .. 61768985

Gene Structure 3501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGTGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCTGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGACGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTTGAGCCCCAAAATTTAAAGGACTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGCTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

344

Amino Acids

37.95

Weight (kDa)

5.92

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	93 - 174	6.7e-25	Protein of unknown function (DUF760)
DUF760	PF05542	246 - 329	7.5e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
AasI	GACNNNNNNGTC	1 cut(s)	598
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	1 cut(s)	851
AcsI	RAATTY	2 cut(s)	308, 772
AcuI	CTGAAG	2 cut(s)	561, 837
AfaI	GTAC	7 cut(s)	39, 455, 497, 583, 662, 793, 984
AfiI	CCNNNNNNNGG	4 cut(s)	156, 245, 346, 871
AgsI	TTSAA	4 cut(s)	485, 677, 697, 959
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	2 cut(s)	577, 1018
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 969, 1001
AluBI	AGCT	3 cut(s)	319, 913, 1003
AluI	AGCT	3 cut(s)	319, 913, 1003
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	762, 795
AlwI	GGATC	1 cut(s)	851
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	5 cut(s)	162, 301, 511, 848, 913
ApoI	RAATTY	2 cut(s)	308, 772
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	3 cut(s)	28, 239, 1034
BanII	GRGCYC	2 cut(s)	219, 768
BbsI	GAAGAC	4 cut(s)	75, 108, 596, 938
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	5 cut(s)	174, 313, 523, 835, 900
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	2 cut(s)	579, 1020
BciVI	GTATCC	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	762, 795
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	3 cut(s)	789, 861, 876
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	6 cut(s)	163, 302, 512, 839, 849, 914
BlsI	GCNGC	6 cut(s)	164, 303, 513, 840, 850, 915
BmcAI	AGTACT	2 cut(s)	793, 984
Bme1390I	CCNGG	2 cut(s)	579, 1020
BmgT120I	GGNCC	1 cut(s)	635
BmrFI	CCNGG	2 cut(s)	579, 1020
BmsI	GCATC	3 cut(s)	343, 550, 640
BpiI	GAAGAC	4 cut(s)	75, 108, 596, 938
BpmI	CTGGAG	2 cut(s)	819, 1002
BpuEI	CTTGAG	2 cut(s)	737, 782
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 245, 346, 871
Bse1I	ACTGG	2 cut(s)	475, 527
Bse3DI	GCAATG	2 cut(s)	363, 825
BseBI	CCWGG	2 cut(s)	579, 1020
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	4 cut(s)	156, 245, 346, 871
BseMI	GCAATG	2 cut(s)	363, 825
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	2 cut(s)	475, 527
BseXI	GCAGC	5 cut(s)	174, 313, 523, 835, 900
BseYI	CCCAGC	1 cut(s)	339
BsgI	GTGCAG	2 cut(s)	320, 879
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	156, 245, 346, 871
BsmAI	GTCTC	2 cut(s)	762, 795
BsmBI	CGTCTC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	3 cut(s)	219, 337, 768
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	856
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	851
BspQI	GCTCTTC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	363, 825
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	475, 527
BssMI	GATC	1 cut(s)	856
Bst2UI	CCWGG	2 cut(s)	579, 1020
Bst4CI	ACNGT	9 cut(s)	16, 130, 253, 370, 412, 418, 427, 458, 495
Bst6I	CTCTTC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	2 cut(s)	639, 654
BstF5I	GGATG	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	1 cut(s)	859
BstMAI	GTCTC	2 cut(s)	762, 795
BstMBI	GATC	1 cut(s)	856
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 922
BstNI	CCWGG	2 cut(s)	579, 1020
BstSCI	CCNGG	2 cut(s)	577, 1018
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	5 cut(s)	174, 313, 523, 835, 900
BstV2I	GAAGAC	4 cut(s)	75, 108, 596, 938
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	249, 423
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	1005
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	635
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	7 cut(s)	38, 454, 496, 582, 661, 792, 983
CviAII	CATG	2 cut(s)	379, 463
CviQI	GTAC	7 cut(s)	38, 454, 496, 582, 661, 792, 983
DdeI	CTNAG	2 cut(s)	639, 654
DpnI	GATC	1 cut(s)	858
DpnII	GATC	1 cut(s)	856
DraI	TTTAAA	1 cut(s)	777
DrdI	GACNNNNNNGTC	1 cut(s)	598
DseDI	GACNNNNNNGTC	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco24I	GRGCYC	2 cut(s)	219, 768
Eco57I	CTGAAG	2 cut(s)	561, 837
EcoRII	CCWGG	2 cut(s)	577, 1018
EcoT38I	GRGCYC	2 cut(s)	219, 768
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	2 cut(s)	382, 466
FatI	CATG	2 cut(s)	378, 462
Fnu4HI	GCNGC	6 cut(s)	163, 302, 512, 839, 849, 914
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	2 cut(s)	219, 768
Fsp4HI	GCNGC	6 cut(s)	163, 302, 512, 839, 849, 914
FspBI	CTAG	3 cut(s)	789, 861, 876
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	6 cut(s)	163, 302, 512, 839, 849, 914
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	2 cut(s)	819, 1002
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	382, 466
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	168, 194, 230, 991
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	3 cut(s)	28, 239, 1034
Hpy166II	GTNNAC	2 cut(s)	423, 584
Hpy188I	TCNGA	2 cut(s)	856, 938
Hpy188III	TCNNGA	3 cut(s)	463, 539, 761
Hpy8I	GTNNAC	2 cut(s)	423, 584
HpyAV	CCTTC	2 cut(s)	536, 865
HpyCH4III	ACNGT	9 cut(s)	16, 130, 253, 370, 412, 418, 427, 458, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 922
HpyF3I	CTNAG	2 cut(s)	639, 654
Hsp92II	CATG	2 cut(s)	382, 466
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	856
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	5 cut(s)	174, 313, 523, 835, 900
LweI	GCATC	3 cut(s)	343, 550, 640
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	3 cut(s)	789, 861, 876
MaeIII	GTNAC	4 cut(s)	370, 412, 669, 880
MalI	GATC	1 cut(s)	858
MboI	GATC	1 cut(s)	856
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	219, 337, 768
MluCI	AATT	7 cut(s)	180, 308, 401, 692, 737, 772, 1010
MmeI	TCCRAC	3 cut(s)	483, 723, 916
MnlI	CCTC	6 cut(s)	34, 249, 261, 682, 1005, 1026
MseI	TTAA	2 cut(s)	776, 1033
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	579, 1020
MvaI	CCWGG	2 cut(s)	579, 1020
MwoI	GCNNNNNNNGC	2 cut(s)	162, 922
NdeII	GATC	1 cut(s)	856
NlaIII	CATG	2 cut(s)	382, 466
NmuCI	GTSAC	2 cut(s)	370, 412
PagI	TCATGA	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	540
PfeI	GAWTC	4 cut(s)	168, 194, 230, 991
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	6 cut(s)	164, 303, 513, 840, 850, 915
Psp6I	CCWGG	2 cut(s)	577, 1018
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	577, 1018
PspPI	GGNCC	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	7 cut(s)	39, 455, 497, 583, 662, 793, 984
RsaNI	GTAC	7 cut(s)	38, 454, 496, 582, 661, 792, 983
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	776, 1033
SatI	GCNGC	6 cut(s)	163, 302, 512, 839, 849, 914
Sau3AI	GATC	1 cut(s)	856
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	2 cut(s)	793, 984
ScrFI	CCNGG	2 cut(s)	579, 1020
SduI	GDGCHC	3 cut(s)	219, 337, 768
SetI	ASST	9 cut(s)	241, 321, 348, 503, 580, 620, 915, 1005, 1024
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	3 cut(s)	343, 550, 640
SfcI	CTRYAG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	752, 761
SmoI	CTYRAG	2 cut(s)	752, 761
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	7 cut(s)	180, 308, 401, 692, 737, 772, 1010
SsiI	CCGC	1 cut(s)	838
SspMI	CTAG	3 cut(s)	789, 861, 876
StyD4I	CCNGG	2 cut(s)	577, 1018
TaaI	ACNGT	9 cut(s)	16, 130, 253, 370, 412, 418, 427, 458, 495
TasI	AATT	7 cut(s)	180, 308, 401, 692, 737, 772, 1010
TatI	WGTACW	5 cut(s)	453, 495, 660, 791, 982
TauI	GCSGC	1 cut(s)	841
TfiI	GAWTC	4 cut(s)	168, 194, 230, 991
Tru1I	TTAA	2 cut(s)	776, 1033
Tru9I	TTAA	2 cut(s)	776, 1033
TscAI	CASTG	2 cut(s)	256, 423
TseFI	GTSAC	2 cut(s)	370, 412
TseI	GCWGC	5 cut(s)	162, 301, 511, 848, 913
Tsp45I	GTSAC	2 cut(s)	370, 412
TspDTI	ATGAA	6 cut(s)	48, 81, 717, 750, 820, 884
TspRI	CASTG	2 cut(s)	256, 423
Van91I	CCANNNNNTGG	1 cut(s)	346
XapI	RAATTY	2 cut(s)	308, 772
XspI	CTAG	3 cut(s)	789, 861, 876
ZrmI	AGTACT	2 cut(s)	793, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.