Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

206838 .. 209351

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTATTCGTTGACGGTCAAGCCCTCTTTCATCTTACCCAAATTGTCTCCGCCGTCGTCATCGTCTTCTTCTTCTGCACATTGTCGGGCTGGGCCGTGTTCTTCCTCTATCAGCTTCCCAATAAAGACGAGAAACAGAGGAAACAGACGCCCACTGAGACTTGATGCTTACGATTCCTCAAAGAGCGACACTCCCAATGGCTCTGCCGATTCCAACCCTCCCAACGCCACCACTCTGCCAAAGAGCAGGAGAGAAATTCTGTTGGAGTATGTCAAAAATGTGCAGCCAGAATTTATGGAGCTGTTTGTAAAAAGGGCGCCCCAGCAGGTTGTTGATGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCCCCACAATTTTTTGCAGTGACAGTCACCACCGTCGCAGAAAATCTTGCACAACTCATGTACAGTATCATGATGACTGGATATATGTTCCAGAATGCACAGTACAGGTTGGAACTGCAGCAAGGTTTAGAGCAGCCAGCTGCTCTTCCTGATGTGCAAGATACAAAGGATGCACCAGATTACGCACCTGGTACACAGAAGAACGTGTCAGGTGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAGAATAGATGCTAAGAAGTACATTGAGTTACTTGAAGCAGAGATTGAGGAACTAAATAATCAAGTTGGTAGGAAATCCGCGGGCGGACAAAATGAATTGTTGGAATATCTGAAGTCTCTTGAACCCCAAAATTTAAAGGAATTGACTAGCAGTGCTGGAGACGATGTTGTGGTTGCGATGAATACATTCATCAAGCGGCTTTTGGCTGTTTCTGATCCTGGCCAAATGAAGACAAGTGTGACAGAGGCAACTGCACCGGAACTTGCGAAGCTGCTGTATTGGCTGATGGTTGTTGGATACAGCATTCGCAATATCGAAGTTCGTTTTGATATGGAACGAGTACTTGGGACTCCACCGAAGCTCGCAGAATTGCCTCCAGGAGAGAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

339

Amino Acids

37.4

Weight (kDa)

5.75

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	704
AciI	CCGC	5 cut(s)	50, 702, 704, 708, 820
AclI	AACGTT	1 cut(s)	1011
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	3 cut(s)	255, 290, 754
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	2 cut(s)	148, 317
AfaI	GTAC	5 cut(s)	437, 479, 568, 644, 966
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	2 cut(s)	659, 746
AjnI	CCWGG	3 cut(s)	562, 841, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	951, 983
AluBI	AGCT	5 cut(s)	114, 301, 515, 895, 985
AluI	AGCT	5 cut(s)	114, 301, 515, 895, 985
Alw26I	GTCTC	4 cut(s)	51, 151, 744, 777
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	3 cut(s)	92, 616, 844
ApeKI	GCWGC	5 cut(s)	283, 493, 508, 515, 895
ApoI	RAATTY	3 cut(s)	255, 290, 754
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	2 cut(s)	319, 345
AspS9I	GGNCC	2 cut(s)	92, 617
AsuHPI	GGTGA	2 cut(s)	394, 599
BalI	TGGCCA	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	57, 860
BbvI	GCAGC	5 cut(s)	295, 502, 505, 520, 882
BccI	CCATC	1 cut(s)	904
BceAI	ACGGC	2 cut(s)	37, 79
BciT130I	CCWGG	3 cut(s)	564, 843, 1002
BciVI	GTATCC	1 cut(s)	914
BcoDI	GTCTC	4 cut(s)	51, 151, 744, 777
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	6 cut(s)	284, 494, 509, 516, 821, 896
BlsI	GCNGC	6 cut(s)	285, 495, 510, 517, 822, 897
BmcAI	AGTACT	1 cut(s)	966
Bme1390I	CCNGG	3 cut(s)	564, 843, 1002
BmgT120I	GGNCC	2 cut(s)	92, 617
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	3 cut(s)	564, 843, 1002
BmsI	GCATC	4 cut(s)	154, 325, 535, 622
BpiI	GAAGAC	2 cut(s)	57, 860
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	2 cut(s)	801, 984
BsaHI	GRCGYC	2 cut(s)	148, 317
BsaJI	CCNNGG	1 cut(s)	702
BsaWI	WCCGGW	1 cut(s)	880
BsaXI	ACNNNNNCTCC	3 cut(s)	774, 804, 996
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	3 cut(s)	564, 843, 1002
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	550
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	146, 612
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	5 cut(s)	295, 502, 505, 520, 882
BseYI	CCCAGC	2 cut(s)	89, 321
BsgI	GTGCAG	3 cut(s)	60, 302, 861
Bsh1236I	CGCG	1 cut(s)	704
BshFI	GGCC	3 cut(s)	94, 618, 846
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	985
BsmAI	GTCTC	4 cut(s)	51, 151, 744, 777
BsmBI	CGTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	985
BsmI	GAATGC	2 cut(s)	475, 927
BsnI	GGCC	3 cut(s)	94, 618, 846
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	838
BspACI	CCGC	5 cut(s)	50, 702, 704, 708, 820
BspANI	GGCC	3 cut(s)	94, 618, 846
BspCNI	CTCAG	2 cut(s)	147, 613
BspFNI	CGCG	1 cut(s)	704
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	1 cut(s)	838
BssNI	GRCGYC	2 cut(s)	148, 317
Bst2UI	CCWGG	3 cut(s)	564, 843, 1002
Bst4CI	ACNGT	6 cut(s)	16, 352, 400, 409, 440, 477
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	2 cut(s)	148, 317
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	513, 706, 987
BstDEI	CTNAG	3 cut(s)	155, 621, 636
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	704
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	319, 345
BstKTI	GATC	1 cut(s)	841
BstMAI	GTCTC	4 cut(s)	51, 151, 744, 777
BstMBI	GATC	1 cut(s)	838
BstMWI	GCNNNNNNNGC	1 cut(s)	904
BstNI	CCWGG	3 cut(s)	564, 843, 1002
BstSCI	CCNGG	3 cut(s)	562, 841, 1000
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	1 cut(s)	704
BstV1I	GCAGC	5 cut(s)	295, 502, 505, 520, 882
BstV2I	GAAGAC	2 cut(s)	57, 860
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	3 cut(s)	94, 618, 846
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	2 cut(s)	399, 781
BtsIMutI	CAGTG	4 cut(s)	152, 357, 399, 781
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	513, 706, 987
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	2 cut(s)	319, 345
Cfr13I	GGNCC	2 cut(s)	92, 617
Cfr42I	CCGCGG	1 cut(s)	705
CseI	GACGC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	562
Csp6I	GTAC	5 cut(s)	436, 478, 567, 643, 965
CviAII	CATG	3 cut(s)	361, 433, 445
CviQI	GTAC	5 cut(s)	436, 478, 567, 643, 965
DdeI	CTNAG	3 cut(s)	155, 621, 636
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	1 cut(s)	840
DpnII	GATC	1 cut(s)	838
DraI	TTTAAA	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	2 cut(s)	39, 723
Eco57I	CTGAAG	1 cut(s)	755
EcoRII	CCWGG	3 cut(s)	562, 841, 1000
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	3 cut(s)	364, 436, 448
FaiI	YATR	8 cut(s)	270, 296, 362, 434, 446, 459, 461, 956
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	3 cut(s)	360, 432, 444
FauI	CCCGC	1 cut(s)	697
Fnu4HI	GCNGC	6 cut(s)	284, 494, 509, 516, 821, 896
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	284, 494, 509, 516, 821, 896
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	2 cut(s)	318, 344
GluI	GCNGC	6 cut(s)	284, 494, 509, 516, 821, 896
GsaI	CCCAGC	2 cut(s)	93, 325
GsuI	CTGGAG	2 cut(s)	801, 984
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	94, 618, 846
HapII	CCGG	1 cut(s)	881
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	2 cut(s)	319, 345
Hin1I	GRCGYC	2 cut(s)	148, 317
Hin1II	CATG	3 cut(s)	364, 436, 448
Hin6I	GCGC	2 cut(s)	317, 343
HinP1I	GCGC	2 cut(s)	317, 343
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	173, 209, 973
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	2 cut(s)	394, 599
Hpy166II	GTNNAC	2 cut(s)	12, 569
Hpy188I	TCNGA	2 cut(s)	735, 838
Hpy188III	TCNNGA	4 cut(s)	445, 466, 524, 743
Hpy8I	GTNNAC	2 cut(s)	12, 569
Hpy99I	CGWCG	2 cut(s)	58, 413
HpyCH4III	ACNGT	6 cut(s)	16, 352, 400, 409, 440, 477
HpyCH4IV	ACGT	2 cut(s)	579, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	904
HpyF3I	CTNAG	3 cut(s)	155, 621, 636
HpySE526I	ACGT	2 cut(s)	579, 1011
Hsp92I	GRCGYC	2 cut(s)	148, 317
Hsp92II	CATG	3 cut(s)	364, 436, 448
HspAI	GCGC	2 cut(s)	317, 343
KasI	GGCGCC	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	705
Kzo9I	GATC	1 cut(s)	838
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	5 cut(s)	295, 502, 505, 520, 882
LweI	GCATC	4 cut(s)	154, 325, 535, 622
MabI	ACCWGGT	1 cut(s)	562
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	2 cut(s)	579, 1011
MaeIII	GTNAC	5 cut(s)	352, 394, 400, 651, 862
MalI	GATC	1 cut(s)	840
MboI	GATC	1 cut(s)	838
MboII	GAAGA	7 cut(s)	57, 60, 63, 93, 512, 586, 865
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	8 cut(s)	41, 255, 290, 383, 719, 754, 764, 992
MluNI	TGGCCA	1 cut(s)	846
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	967
MmeI	TCCRAC	5 cut(s)	237, 243, 465, 705, 898
MnlI	CCTC	8 cut(s)	34, 115, 131, 187, 228, 664, 862, 1008
Mox20I	TGGCCA	1 cut(s)	846
MroXI	GAANNNNTTC	1 cut(s)	809
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	2 cut(s)	758, 1015
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	515, 704
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	3 cut(s)	564, 843, 1002
Mva1269I	GAATGC	2 cut(s)	475, 927
MvaI	CCWGG	3 cut(s)	564, 843, 1002
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	904
NarI	GGCGCC	1 cut(s)	317
NdeII	GATC	1 cut(s)	838
NlaIII	CATG	3 cut(s)	364, 436, 448
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	4 cut(s)	352, 394, 400, 862
PagI	TCATGA	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	525
PctI	GAATGC	2 cut(s)	475, 927
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	173, 209
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	6 cut(s)	285, 495, 510, 517, 822, 897
PleI	GAGTC	1 cut(s)	967
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	967
Psp1406I	AACGTT	1 cut(s)	1011
Psp6I	CCWGG	3 cut(s)	562, 841, 1000
PspFI	CCCAGC	2 cut(s)	89, 321
PspGI	CCWGG	3 cut(s)	562, 841, 1000
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	92, 617
PstI	CTGCAG	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	5 cut(s)	437, 479, 568, 644, 966
RsaNI	GTAC	5 cut(s)	436, 478, 567, 643, 965
SacII	CCGCGG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	758, 1015
SatI	GCNGC	6 cut(s)	284, 494, 509, 516, 821, 896
Sau3AI	GATC	1 cut(s)	838
Sau96I	GGNCC	2 cut(s)	92, 617
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	1 cut(s)	967
ScrFI	CCNGG	3 cut(s)	564, 843, 1002
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	4 cut(s)	154, 325, 535, 622
SfcI	CTRYAG	1 cut(s)	491
SfoI	GGCGCC	1 cut(s)	318
Sfr303I	CCGCGG	1 cut(s)	705
SgrBI	CCGCGG	1 cut(s)	705
Sse9I	AATT	8 cut(s)	41, 255, 290, 383, 719, 754, 764, 992
SsiI	CCGC	5 cut(s)	50, 702, 704, 708, 820
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	562, 841, 1000
TaaI	ACNGT	6 cut(s)	16, 352, 400, 409, 440, 477
TaiI	ACGT	2 cut(s)	582, 1014
TaqI	TCGA	1 cut(s)	939
TasI	AATT	8 cut(s)	41, 255, 290, 383, 719, 754, 764, 992
TatI	WGTACW	4 cut(s)	435, 477, 642, 964
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	2 cut(s)	173, 209
Tru1I	TTAA	2 cut(s)	758, 1015
Tru9I	TTAA	2 cut(s)	758, 1015
TscAI	CASTG	4 cut(s)	159, 357, 399, 781
TseFI	GTSAC	4 cut(s)	352, 394, 400, 862
TseI	GCWGC	5 cut(s)	283, 493, 508, 515, 895
Tsp45I	GTSAC	4 cut(s)	352, 394, 400, 862
TspDTI	ATGAA	5 cut(s)	19, 732, 802, 818, 866
TspRI	CASTG	4 cut(s)	159, 357, 399, 781
XapI	RAATTY	3 cut(s)	255, 290, 754
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	1 cut(s)	771
ZrmI	AGTACT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.