Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

59903971 .. 59918107

Gene Structure 14137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCATGTATTCCTTGACGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGCTTGTAAAGAGAGCACCCCACCCCAGCAGGTATTTATTTATTTATGTCTTTTTGGCAAGCAGCCGCGCGATTTTAATGTTGATGAGGAGGATAACTTACTTGCTCGTGCAAGGATTGAGAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCCAAGGGCAAGAGAAAAAACCTGATCCTAGAAGCATTGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGATGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGACTGTGAGGAAGGATCAGATTGTTCGTGCTCTATCGAAATTGAAGCCCACCAGGTGTTCGATATAATGCCTCTTACAACTGACTTATGTGGAAACAAATGCACGTGTGATGCTGAACCATTCTTTGAACTGGTAAGGGGAAAAGTTGGACTTCTTTCACTCATCTTTGTGGAGTTGTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

375

Amino Acids

42.14

Weight (kDa)

5.25

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	112 - 142	2.7e-07	Protein of unknown function (DUF760)
DUF760	PF05542	220 - 303	3.3e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccII	CGCG	2 cut(s)	276, 278
AciI	CCGC	3 cut(s)	74, 274, 760
AclWI	GGATC	3 cut(s)	461, 773, 964
AcsI	RAATTY	2 cut(s)	197, 694
AcvI	CACGTG	1 cut(s)	1047
AdeI	CACNNNGTG	1 cut(s)	997
AfaI	GTAC	7 cut(s)	359, 401, 505, 584, 715, 906, 1121
AfiI	CCNNNNNNNGG	3 cut(s)	45, 134, 793
AflIII	ACRYGT	1 cut(s)	1046
AgsI	TTSAA	6 cut(s)	389, 599, 619, 881, 986, 1070
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	2 cut(s)	499, 993
AjuI	GAANNNNNNNTTGG	2 cut(s)	891, 923
AluBI	AGCT	3 cut(s)	208, 835, 925
AluI	AGCT	3 cut(s)	208, 835, 925
Alw21I	GWGCWC	2 cut(s)	226, 974
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	3 cut(s)	461, 773, 964
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	7 cut(s)	51, 190, 208, 270, 415, 818, 835
ApoI	RAATTY	2 cut(s)	197, 694
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	108, 690
BauI	CACGAG	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	1047
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	2 cut(s)	226, 974
BbvI	GCAGC	7 cut(s)	63, 195, 202, 282, 427, 822, 830
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	501, 995
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	684
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	4 cut(s)	471, 711, 783, 798
BfmI	CTRYAG	2 cut(s)	413, 816
BfuAI	ACCTGC	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	739
BmcAI	AGTACT	2 cut(s)	715, 906
Bme1390I	CCNGG	2 cut(s)	501, 995
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	2 cut(s)	501, 995
BmsI	GCATC	3 cut(s)	472, 562, 1042
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	2 cut(s)	741, 924
BpuEI	CTTGAG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	1047
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 134, 793
Bse1I	ACTGG	3 cut(s)	379, 431, 1077
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	501, 995
BseDI	CCNNGG	1 cut(s)	445
BseLI	CCNNNNNNNGG	3 cut(s)	45, 134, 793
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	3 cut(s)	379, 431, 1077
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	7 cut(s)	63, 195, 202, 282, 427, 822, 830
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	276, 278
BshFI	GGCC	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	226, 974
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	45, 134, 793
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	4 cut(s)	108, 226, 690, 974
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	466, 778, 956
BspACI	CCGC	3 cut(s)	74, 274, 760
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	2 cut(s)	276, 278
BspHI	TCATGA	1 cut(s)	366
BspMAI	CTGCAG	2 cut(s)	417, 820
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	3 cut(s)	461, 773, 964
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	379, 431, 1077
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	466, 778, 956
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	501, 995
Bst4CI	ACNGT	4 cut(s)	142, 362, 399, 947
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	1047
BstC8I	GCNNGC	2 cut(s)	268, 927
BstDEI	CTNAG	2 cut(s)	561, 576
BstFNI	CGCG	2 cut(s)	276, 278
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	3 cut(s)	469, 781, 959
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	3 cut(s)	466, 778, 956
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 827, 844
BstNI	CCWGG	2 cut(s)	501, 995
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	499, 993
BstSFI	CTRYAG	2 cut(s)	413, 816
BstUI	CGCG	2 cut(s)	276, 278
BstV1I	GCAGC	7 cut(s)	63, 195, 202, 282, 427, 822, 830
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	268, 927
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	557
CsiI	ACCWGGT	2 cut(s)	499, 993
Csp6I	GTAC	7 cut(s)	358, 400, 504, 583, 714, 905, 1120
CviAII	CATG	2 cut(s)	5, 367
CviQI	GTAC	7 cut(s)	358, 400, 504, 583, 714, 905, 1120
DdeI	CTNAG	2 cut(s)	561, 576
DpnI	GATC	3 cut(s)	468, 780, 958
DpnII	GATC	3 cut(s)	466, 778, 956
DraI	TTTAAA	1 cut(s)	699
DraIII	CACNNNGTG	1 cut(s)	997
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	108, 690
Eco72I	CACGTG	1 cut(s)	1047
Eco88I	CYCGRG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	499, 993
EcoT14I	CCWWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	108, 690
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	8, 370
FalI	AAGNNNNNCTT	2 cut(s)	1077, 1109
FatI	CATG	2 cut(s)	4, 366
FriOI	GRGCYC	2 cut(s)	108, 690
FspBI	CTAG	4 cut(s)	471, 711, 783, 798
GlaI	GCGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	741, 924
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	8, 370
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	4 cut(s)	57, 83, 119, 913
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	506, 708
Hpy188I	TCNGA	3 cut(s)	778, 860, 961
Hpy188III	TCNNGA	3 cut(s)	367, 683, 941
Hpy8I	GTNNAC	2 cut(s)	506, 708
HpyAV	CCTTC	2 cut(s)	787, 947
HpyCH4III	ACNGT	4 cut(s)	142, 362, 399, 947
HpyCH4IV	ACGT	2 cut(s)	18, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 827, 844
HpyF3I	CTNAG	2 cut(s)	561, 576
HpySE526I	ACGT	2 cut(s)	18, 1046
Hsp92II	CATG	2 cut(s)	8, 370
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	466, 778, 956
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	7 cut(s)	63, 195, 202, 282, 427, 822, 830
LweI	GCATC	3 cut(s)	472, 562, 1042
MabI	ACCWGGT	2 cut(s)	499, 993
MaeI	CTAG	4 cut(s)	471, 711, 783, 798
MaeII	ACGT	2 cut(s)	18, 1046
MaeIII	GTNAC	2 cut(s)	591, 802
MalI	GATC	3 cut(s)	468, 780, 958
MboI	GATC	3 cut(s)	466, 778, 956
MboII	GAAGA	3 cut(s)	78, 431, 860
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	4 cut(s)	108, 226, 690, 974
MluCI	AATT	7 cut(s)	69, 197, 614, 659, 694, 932, 981
MmeI	TCCRAC	4 cut(s)	387, 645, 838, 1069
MnlI	CCTC	9 cut(s)	138, 150, 288, 291, 604, 927, 943, 948, 1023
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	284, 698
MslI	CAYNNNNRTG	1 cut(s)	1109
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	501, 995
MvaI	CCWGG	2 cut(s)	501, 995
MvnI	CGCG	2 cut(s)	276, 278
MwoI	GCNNNNNNNGC	3 cut(s)	51, 827, 844
NdeII	GATC	3 cut(s)	466, 778, 956
NlaIII	CATG	2 cut(s)	8, 370
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	683
PagI	TCATGA	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	4 cut(s)	57, 83, 119, 913
PmaCI	CACGTG	1 cut(s)	1047
PmlI	CACGTG	1 cut(s)	1047
Ppu21I	YACGTR	1 cut(s)	1047
Psp6I	CCWGG	2 cut(s)	499, 993
PspCI	CACGTG	1 cut(s)	1047
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	499, 993
PspPI	GGNCC	1 cut(s)	557
PstI	CTGCAG	2 cut(s)	417, 820
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	7 cut(s)	359, 401, 505, 584, 715, 906, 1121
RsaNI	GTAC	7 cut(s)	358, 400, 504, 583, 714, 905, 1120
RseI	CAYNNNNRTG	1 cut(s)	1109
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	284, 698
Sau3AI	GATC	3 cut(s)	466, 778, 956
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	2 cut(s)	715, 906
ScrFI	CCNGG	2 cut(s)	501, 995
SduI	GDGCHC	4 cut(s)	108, 226, 690, 974
SexAI	ACCWGGT	2 cut(s)	499, 993
SfaNI	GCATC	3 cut(s)	472, 562, 1042
SfcI	CTRYAG	2 cut(s)	413, 816
Sfr274I	CTCGAG	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SmlI	CTYRAG	2 cut(s)	674, 683
SmoI	CTYRAG	2 cut(s)	674, 683
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	7 cut(s)	69, 197, 614, 659, 694, 932, 981
SsiI	CCGC	3 cut(s)	74, 274, 760
SspMI	CTAG	4 cut(s)	471, 711, 783, 798
StyD4I	CCNGG	2 cut(s)	499, 993
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	4 cut(s)	142, 362, 399, 947
TaiI	ACGT	2 cut(s)	21, 1049
TaqI	TCGA	4 cut(s)	515, 684, 978, 1002
TasI	AATT	7 cut(s)	69, 197, 614, 659, 694, 932, 981
TatI	WGTACW	5 cut(s)	357, 399, 582, 713, 904
TauI	GCSGC	3 cut(s)	77, 276, 763
TfiI	GAWTC	4 cut(s)	57, 83, 119, 913
Tru1I	TTAA	2 cut(s)	284, 698
Tru9I	TTAA	2 cut(s)	284, 698
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	7 cut(s)	51, 190, 208, 270, 415, 818, 835
TspDTI	ATGAA	4 cut(s)	639, 672, 742, 806
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	2 cut(s)	197, 694
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	683
XspI	CTAG	4 cut(s)	471, 711, 783, 798
ZrmI	AGTACT	2 cut(s)	715, 906
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.