Rroxscaffold_7G00197920

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003449
Physical Location & Seq
Forward (+)
42606686 .. 42612903
6218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197920.1

Sequence Viewer

Length: 954 bp
ATGAAACCACCGTGCTGCATTTCTCCGGCTTCGATCGACCAAGACCAGGCCGACCCGGTCACGGCGAAGCAGTCGGTCACTACGGCTCGAAACTCGACGCCGCAATCCAAGTTCGAAGCGTCGGCTACGGCTAGAAGCCGAGTTACTCTGCTCAGGTCTTGTCGGTGGAGATCGAATCGGAATAAAGCCTCGTCCGCCACGGTGCAACTCGAAGTGGAGGAAGCGTTCGCTAGCCGAGAGGTTCATGGACCGGACAAGGTTACGATGAGCCGATCGAGAGAAAGACGTGATGTTGATCGGAATGAACTTGTTGAGGTATTTGAAGAAGGCAACCGGAATGGGGGCGGTACGAGCCTTTCGGCGAAGTGCGGTGAAGAGAGGACGAGTGCTTGGATTGAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATCTTCCACTGTGGGGGCAGTGGGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTTAGTGCTGTGTGTGGAATTGCAAATAATGGAAAGTTATAACGGGAAGGCTCAAGTAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

317

Amino Acids

34.81

Weight (kDa)

5.17

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 193 - 282 1.1e-18 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AciI CCGC 5 cut(s) 101, 195, 345, 369, 679
AclWI GGATC 1 cut(s) 692
AcsI RAATTY 1 cut(s) 613
AcyI GRCGYC 1 cut(s) 98
AfaI GTAC 5 cut(s) 349, 424, 503, 634, 843
AfiI CCNNNNNNNGG 4 cut(s) 46, 61, 340, 721
AgsI TTSAA 4 cut(s) 323, 518, 538, 818
AhlI ACTAGT 1 cut(s) 629
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 3 cut(s) 45, 418, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 772, 862
AluI AGCT 2 cut(s) 772, 862
Alw26I GTCTC 2 cut(s) 603, 636
AlwI GGATC 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 2 cut(s) 48, 475
ApeKI GCWGC 3 cut(s) 15, 755, 772
ApoI RAATTY 1 cut(s) 613
AspS9I GGNCC 2 cut(s) 248, 476
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 383, 893
AsuII TTCGAA 1 cut(s) 114
AsuNHI GCTAGC 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 609
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbsI GAAGAC 1 cut(s) 797
BbvI GCAGC 3 cut(s) 2, 759, 767
BceAI ACGGC 3 cut(s) 78, 99, 144
BciT130I CCWGG 3 cut(s) 47, 420, 879
BciVI GTATCC 1 cut(s) 658
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 603, 636
BcuI ACTAGT 1 cut(s) 629
BfaI CTAG 5 cut(s) 132, 231, 630, 702, 735
BfmI CTRYAG 1 cut(s) 753
BfuI GTATCC 1 cut(s) 658
BisI GCNGC 5 cut(s) 16, 101, 680, 756, 773
BlsI GCNGC 5 cut(s) 17, 102, 681, 757, 774
BmcAI AGTACT 2 cut(s) 634, 843
Bme1390I CCNGG 4 cut(s) 47, 56, 420, 879
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 602
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 248, 476
BmrFI CCNGG 4 cut(s) 47, 56, 420, 879
BmsI GCATC 2 cut(s) 391, 481
BmtI GCTAGC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 797
BpmI CTGGAG 2 cut(s) 660, 861
Bpu10I CCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 578, 927
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 250, 333
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 633, 663
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 61, 340, 721
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 3 cut(s) 47, 420, 879
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 4 cut(s) 46, 61, 340, 721
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 166, 471
BseXI GCAGC 3 cut(s) 2, 759, 767
Bsh1285I CGRYCG 2 cut(s) 36, 275
BshFI GGCC 2 cut(s) 50, 477
BsiEI CGRYCG 2 cut(s) 36, 275
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 4 cut(s) 26, 56, 251, 334
BslI CCNNNNNNNGG 4 cut(s) 46, 61, 340, 721
BsmAI GTCTC 2 cut(s) 603, 636
BsmBI CGTCTC 1 cut(s) 636
BsnI GGCC 2 cut(s) 50, 477
BsoBI CYCGRG 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 5 cut(s) 33, 170, 272, 295, 697
BspACI CCGC 5 cut(s) 101, 195, 345, 369, 679
BspANI GGCC 2 cut(s) 50, 477
BspCNI CTCAG 2 cut(s) 165, 472
BspMAI CTGCAG 1 cut(s) 757
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 692
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 666
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 5 cut(s) 33, 170, 272, 295, 697
BssNI GRCGYC 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 47, 420, 879
Bst4CI ACNGT 3 cut(s) 12, 202, 719
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 232, 864
BstDEI CTNAG 3 cut(s) 152, 480, 495
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 5 cut(s) 36, 173, 275, 298, 700
BstMAI GTCTC 2 cut(s) 603, 636
BstMBI GATC 5 cut(s) 33, 170, 272, 295, 697
BstMCI CGRYCG 2 cut(s) 36, 275
BstMWI GCNNNNNNNGC 4 cut(s) 194, 351, 764, 781
BstNI CCWGG 3 cut(s) 47, 420, 879
BstSCI CCNGG 4 cut(s) 45, 54, 418, 877
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 2, 759, 767
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 2 cut(s) 50, 477
BtgI CCRYGG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 733
BtsIMutI CAGTG 2 cut(s) 715, 733
Cac8I GCNNGC 2 cut(s) 232, 864
Cfr13I GGNCC 2 cut(s) 248, 476
CseI GACGC 2 cut(s) 106, 108
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 5 cut(s) 348, 423, 502, 633, 842
CviAII CATG 1 cut(s) 245
CviQI GTAC 5 cut(s) 348, 423, 502, 633, 842
DdeI CTNAG 3 cut(s) 152, 480, 495
DpnI GATC 5 cut(s) 35, 172, 274, 297, 699
DpnII GATC 5 cut(s) 33, 170, 272, 295, 697
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 45, 418, 877
EcoT38I GRGCYC 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 1 cut(s) 248
FaiI YATR 6 cut(s) 246, 414, 506, 801, 833, 930
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 16, 101, 680, 756, 773
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 5 cut(s) 16, 101, 680, 756, 773
FspBI CTAG 5 cut(s) 132, 231, 630, 702, 735
GluI GCNGC 5 cut(s) 16, 101, 680, 756, 773
GsuI CTGGAG 2 cut(s) 660, 861
HaeIII GGCC 2 cut(s) 50, 477
HapII CCGG 4 cut(s) 26, 56, 251, 334
HgaI GACGC 2 cut(s) 106, 108
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 2 cut(s) 175, 850
HpaII CCGG 4 cut(s) 26, 56, 251, 334
HphI GGTGA 2 cut(s) 383, 893
Hpy166II GTNNAC 2 cut(s) 425, 627
Hpy188I TCNGA 4 cut(s) 180, 300, 697, 797
Hpy188III TCNNGA 2 cut(s) 276, 602
Hpy8I GTNNAC 2 cut(s) 425, 627
Hpy99I CGWCG 2 cut(s) 100, 124
HpyAV CCTTC 2 cut(s) 320, 931
HpyCH4III ACNGT 3 cut(s) 12, 202, 719
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 9 cut(s) 18, 205, 404, 416, 563, 659, 755, 767, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 351, 764, 781
HpyF3I CTNAG 3 cut(s) 152, 480, 495
HpySE526I ACGT 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 5 cut(s) 33, 170, 272, 295, 697
Lsp1109I GCAGC 3 cut(s) 2, 759, 767
LweI GCATC 2 cut(s) 391, 481
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 5 cut(s) 132, 231, 630, 702, 735
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 6 cut(s) 58, 76, 142, 259, 510, 739
MalI GATC 5 cut(s) 35, 172, 274, 297, 699
MboI GATC 5 cut(s) 33, 170, 272, 295, 697
MboII GAAGA 4 cut(s) 335, 386, 703, 797
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 1 cut(s) 609
MluCI AATT 5 cut(s) 533, 578, 613, 869, 908
MmeI TCCRAC 2 cut(s) 564, 775
MnlI CCTC 9 cut(s) 199, 211, 232, 307, 372, 391, 523, 864, 885
MseI TTAA 1 cut(s) 617
MspI CCGG 4 cut(s) 26, 56, 251, 334
MspR9I CCNGG 4 cut(s) 47, 56, 420, 879
MvaI CCWGG 3 cut(s) 47, 420, 879
MwoI GCNNNNNNNGC 4 cut(s) 194, 351, 764, 781
NciI CCSGG 1 cut(s) 56
NdeII GATC 5 cut(s) 33, 170, 272, 295, 697
NheI GCTAGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 248
NmeAIII GCCGAG 2 cut(s) 164, 260
NmuCI GTSAC 2 cut(s) 58, 76
NspV TTCGAA 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 602
PfeI GAWTC 2 cut(s) 175, 850
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 5 cut(s) 17, 102, 681, 757, 774
Ple19I CGATCG 2 cut(s) 36, 275
PsiI TTATAA 1 cut(s) 930
Psp6I CCWGG 3 cut(s) 45, 418, 877
PspGI CCWGG 3 cut(s) 45, 418, 877
PspPI GGNCC 2 cut(s) 248, 476
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 697
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 2 cut(s) 36, 275
RsaI GTAC 5 cut(s) 349, 424, 503, 634, 843
RsaNI GTAC 5 cut(s) 348, 423, 502, 633, 842
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 5 cut(s) 16, 101, 680, 756, 773
Sau3AI GATC 5 cut(s) 33, 170, 272, 295, 697
Sau96I GGNCC 2 cut(s) 248, 476
ScaI AGTACT 2 cut(s) 634, 843
ScrFI CCNGG 4 cut(s) 47, 56, 420, 879
SduI GDGCHC 1 cut(s) 609
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 2 cut(s) 391, 481
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 593, 602, 942
SmoI CTYRAG 3 cut(s) 593, 602, 942
SpeI ACTAGT 1 cut(s) 629
Sse9I AATT 5 cut(s) 533, 578, 613, 869, 908
SsiI CCGC 5 cut(s) 101, 195, 345, 369, 679
SspMI CTAG 5 cut(s) 132, 231, 630, 702, 735
StyD4I CCNGG 4 cut(s) 45, 54, 418, 877
TaaI ACNGT 3 cut(s) 12, 202, 719
TaiI ACGT 1 cut(s) 289
TaqII GACCGA 1 cut(s) 64
TasI AATT 5 cut(s) 533, 578, 613, 869, 908
TatI WGTACW 3 cut(s) 501, 632, 841
TauI GCSGC 2 cut(s) 103, 682
TfiI GAWTC 2 cut(s) 175, 850
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 2 cut(s) 722, 733
TseFI GTSAC 2 cut(s) 58, 76
TseI GCWGC 3 cut(s) 15, 755, 772
Tsp45I GTSAC 2 cut(s) 58, 76
TspDTI ATGAA 6 cut(s) 17, 233, 318, 558, 591, 661
TspRI CASTG 2 cut(s) 722, 733
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 613
XhoI CTCGAG 1 cut(s) 602
XspI CTAG 5 cut(s) 132, 231, 630, 702, 735
ZrmI AGTACT 2 cut(s) 634, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.