Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

24227247 .. 24229953

Gene Structure 2707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCTTCTTCTTCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAAGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGCTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCAAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGTTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

335

Amino Acids

36.99

Weight (kDa)

6.68

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	84 - 165	5.9e-25	Protein of unknown function (DUF760)
DUF760	PF05542	237 - 320	2.9e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	2 cut(s)	158, 811
AclWI	GGATC	1 cut(s)	824
AcsI	RAATTY	2 cut(s)	281, 745
AfaI	GTAC	7 cut(s)	39, 428, 470, 556, 635, 766, 957
AfiI	CCNNNNNNNGG	4 cut(s)	129, 218, 319, 844
AgsI	TTSAA	4 cut(s)	458, 650, 670, 932
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	550, 991
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 942, 974
AluBI	AGCT	3 cut(s)	292, 886, 976
AluI	AGCT	3 cut(s)	292, 886, 976
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	735, 768
AlwI	GGATC	1 cut(s)	824
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	6 cut(s)	135, 274, 292, 484, 869, 886
ApoI	RAATTY	2 cut(s)	281, 745
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	28, 212, 1007
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	81, 911
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	6 cut(s)	147, 279, 286, 496, 873, 881
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	552, 993
BciVI	GTATCC	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	735, 768
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	2 cut(s)	762, 834
BfmI	CTRYAG	2 cut(s)	482, 867
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	8 cut(s)	136, 159, 275, 293, 485, 812, 870, 887
BlsI	GCNGC	8 cut(s)	137, 160, 276, 294, 486, 813, 871, 888
BmcAI	AGTACT	2 cut(s)	766, 957
Bme1390I	CCNGG	2 cut(s)	552, 993
BmgT120I	GGNCC	1 cut(s)	608
BmrFI	CCNGG	2 cut(s)	552, 993
BmsI	GCATC	3 cut(s)	316, 523, 613
BpiI	GAAGAC	2 cut(s)	81, 911
BpmI	CTGGAG	2 cut(s)	792, 975
BpuEI	CTTGAG	2 cut(s)	710, 719
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 218, 319, 844
Bse1I	ACTGG	2 cut(s)	448, 500
Bse3DI	GCAATG	2 cut(s)	336, 798
BseBI	CCWGG	2 cut(s)	552, 993
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	4 cut(s)	129, 218, 319, 844
BseMI	GCAATG	2 cut(s)	336, 798
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	448, 500
BseXI	GCAGC	6 cut(s)	147, 279, 286, 496, 873, 881
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	4 cut(s)	129, 218, 319, 844
BsmAI	GTCTC	2 cut(s)	735, 768
BsmBI	CGTCTC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	192, 310
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	2 cut(s)	158, 811
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	435
BspMAI	CTGCAG	2 cut(s)	486, 871
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	824
BspQI	GCTCTTC	1 cut(s)	513
BsrDI	GCAATG	2 cut(s)	336, 798
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	448, 500
BssMI	GATC	1 cut(s)	829
Bst2UI	CCWGG	2 cut(s)	552, 993
Bst4CI	ACNGT	9 cut(s)	16, 103, 226, 343, 385, 391, 400, 431, 468
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	878
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	2 cut(s)	612, 627
BstF5I	GGATG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	2 cut(s)	735, 768
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 878, 895
BstNI	CCWGG	2 cut(s)	552, 993
BstSCI	CCNGG	2 cut(s)	550, 991
BstSFI	CTRYAG	2 cut(s)	482, 867
BstV1I	GCAGC	6 cut(s)	147, 279, 286, 496, 873, 881
BstV2I	GAAGAC	2 cut(s)	81, 911
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	222, 396
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	978
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	7 cut(s)	38, 427, 469, 555, 634, 765, 956
CviAII	CATG	2 cut(s)	352, 436
CviQI	GTAC	7 cut(s)	38, 427, 469, 555, 634, 765, 956
DdeI	CTNAG	2 cut(s)	612, 627
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
DraI	TTTAAA	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	550, 991
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	2 cut(s)	355, 439
FatI	CATG	2 cut(s)	351, 435
Fnu4HI	GCNGC	8 cut(s)	136, 159, 275, 293, 485, 812, 870, 887
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	8 cut(s)	136, 159, 275, 293, 485, 812, 870, 887
FspBI	CTAG	2 cut(s)	762, 834
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	8 cut(s)	136, 159, 275, 293, 485, 812, 870, 887
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	2 cut(s)	792, 975
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	355, 439
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	4 cut(s)	141, 167, 203, 964
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	3 cut(s)	28, 212, 1007
Hpy166II	GTNNAC	3 cut(s)	396, 557, 759
Hpy188I	TCNGA	2 cut(s)	829, 911
Hpy188III	TCNNGA	2 cut(s)	436, 512
Hpy8I	GTNNAC	3 cut(s)	396, 557, 759
HpyAV	CCTTC	3 cut(s)	235, 509, 838
HpyCH4III	ACNGT	9 cut(s)	16, 103, 226, 343, 385, 391, 400, 431, 468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 878, 895
HpyF3I	CTNAG	2 cut(s)	612, 627
Hsp92II	CATG	2 cut(s)	355, 439
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	829
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	6 cut(s)	147, 279, 286, 496, 873, 881
LweI	GCATC	3 cut(s)	316, 523, 613
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	2 cut(s)	762, 834
MaeIII	GTNAC	4 cut(s)	343, 385, 642, 853
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	192, 310
MluCI	AATT	7 cut(s)	153, 281, 374, 665, 710, 745, 983
MmeI	TCCRAC	3 cut(s)	456, 696, 889
MnlI	CCTC	5 cut(s)	34, 222, 655, 978, 999
MseI	TTAA	2 cut(s)	749, 1006
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	552, 993
MvaI	CCWGG	2 cut(s)	552, 993
MwoI	GCNNNNNNNGC	3 cut(s)	135, 878, 895
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	2 cut(s)	355, 439
NmuCI	GTSAC	2 cut(s)	343, 385
PagI	TCATGA	1 cut(s)	435
PaqCI	CACCTGC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	513
PfeI	GAWTC	4 cut(s)	141, 167, 203, 964
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	8 cut(s)	137, 160, 276, 294, 486, 813, 871, 888
Psp6I	CCWGG	2 cut(s)	550, 991
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	550, 991
PspPI	GGNCC	1 cut(s)	608
PstI	CTGCAG	2 cut(s)	486, 871
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	7 cut(s)	39, 428, 470, 556, 635, 766, 957
RsaNI	GTAC	7 cut(s)	38, 427, 469, 555, 634, 765, 956
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	749, 1006
SatI	GCNGC	8 cut(s)	136, 159, 275, 293, 485, 812, 870, 887
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	1 cut(s)	608
ScaI	AGTACT	2 cut(s)	766, 957
ScrFI	CCNGG	2 cut(s)	552, 993
SduI	GDGCHC	2 cut(s)	192, 310
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	316, 523, 613
SfcI	CTRYAG	2 cut(s)	482, 867
SmlI	CTYRAG	2 cut(s)	725, 734
SmoI	CTYRAG	2 cut(s)	725, 734
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	7 cut(s)	153, 281, 374, 665, 710, 745, 983
SsiI	CCGC	2 cut(s)	158, 811
SspMI	CTAG	2 cut(s)	762, 834
StyD4I	CCNGG	2 cut(s)	550, 991
TaaI	ACNGT	9 cut(s)	16, 103, 226, 343, 385, 391, 400, 431, 468
TaqI	TCGA	1 cut(s)	566
TasI	AATT	7 cut(s)	153, 281, 374, 665, 710, 745, 983
TatI	WGTACW	5 cut(s)	426, 468, 633, 764, 955
TauI	GCSGC	2 cut(s)	161, 814
TfiI	GAWTC	4 cut(s)	141, 167, 203, 964
Tru1I	TTAA	2 cut(s)	749, 1006
Tru9I	TTAA	2 cut(s)	749, 1006
TscAI	CASTG	2 cut(s)	229, 396
TseFI	GTSAC	2 cut(s)	343, 385
TseI	GCWGC	6 cut(s)	135, 274, 292, 484, 869, 886
Tsp45I	GTSAC	2 cut(s)	343, 385
TspDTI	ATGAA	5 cut(s)	54, 690, 723, 793, 857
TspRI	CASTG	2 cut(s)	229, 396
Van91I	CCANNNNNTGG	1 cut(s)	319
XapI	RAATTY	2 cut(s)	281, 745
XspI	CTAG	2 cut(s)	762, 834
ZrmI	AGTACT	2 cut(s)	766, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.