Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

62956855 .. 62959887

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG442700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCATCTGCTTATTCTTGGGTTGCGTCGTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGTGGCTTACGATTCTTCCAAGAACAACAATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCGCCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACCGTTGCCGAAAATCTTGCACAACTTATGTACAGCATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGACGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAATACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

332

Amino Acids

36.9

Weight (kDa)

5.89

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	81 - 162	6.3e-25	Protein of unknown function (DUF760)
DUF760	PF05542	234 - 317	6e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	298
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	1 cut(s)	802
AclWI	GGATC	1 cut(s)	815
AcsI	RAATTY	2 cut(s)	272, 736
AfaI	GTAC	6 cut(s)	39, 419, 461, 547, 626, 948
AfiI	CCNNNNNNNGG	4 cut(s)	120, 209, 310, 835
AgsI	TTSAA	4 cut(s)	449, 641, 661, 923
AjnI	CCWGG	2 cut(s)	541, 982
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 933, 965
AluBI	AGCT	3 cut(s)	283, 877, 967
AluI	AGCT	3 cut(s)	283, 877, 967
Alw26I	GTCTC	2 cut(s)	726, 759
AlwI	GGATC	1 cut(s)	815
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	4 cut(s)	126, 265, 475, 877
ApoI	RAATTY	2 cut(s)	272, 736
AspLEI	GCGC	2 cut(s)	301, 327
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	28, 203, 998
AvaI	CYCGRG	1 cut(s)	725
BanII	GRGCYC	2 cut(s)	183, 732
BbsI	GAAGAC	3 cut(s)	78, 560, 902
BbvI	GCAGC	4 cut(s)	138, 277, 487, 864
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	2 cut(s)	543, 984
BciVI	GTATCC	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	726, 759
BfaI	CTAG	2 cut(s)	825, 840
BfmI	CTRYAG	1 cut(s)	473
BfoI	RGCGCY	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	781
BisI	GCNGC	5 cut(s)	127, 266, 476, 803, 878
BlsI	GCNGC	5 cut(s)	128, 267, 477, 804, 879
BmcAI	AGTACT	1 cut(s)	948
Bme1390I	CCNGG	2 cut(s)	543, 984
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	543, 984
BmsI	GCATC	4 cut(s)	307, 432, 514, 604
BpiI	GAAGAC	3 cut(s)	78, 560, 902
BpmI	CTGGAG	2 cut(s)	783, 966
BpuEI	CTTGAG	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 209, 310, 835
Bse1I	ACTGG	2 cut(s)	439, 491
Bse3DI	GCAATG	2 cut(s)	327, 789
BseBI	CCWGG	2 cut(s)	543, 984
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	4 cut(s)	120, 209, 310, 835
BseMI	GCAATG	2 cut(s)	327, 789
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	439, 491
BseXI	GCAGC	4 cut(s)	138, 277, 487, 864
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	2 cut(s)	284, 843
BshFI	GGCC	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	4 cut(s)	120, 209, 310, 835
BsmAI	GTCTC	2 cut(s)	726, 759
BsmBI	CGTCTC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	183, 732
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	820
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	815
BspQI	GCTCTTC	1 cut(s)	504
BsrDI	GCAATG	2 cut(s)	327, 789
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	439, 491
BssMI	GATC	1 cut(s)	820
Bst2UI	CCWGG	2 cut(s)	543, 984
Bst4CI	ACNGT	8 cut(s)	16, 94, 217, 334, 376, 382, 391, 459
Bst6I	CTCTTC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	969
BstDEI	CTNAG	2 cut(s)	603, 618
BstF5I	GGATG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	301, 327
BstKTI	GATC	1 cut(s)	823
BstMAI	GTCTC	2 cut(s)	726, 759
BstMBI	GATC	1 cut(s)	820
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 886
BstNI	CCWGG	2 cut(s)	543, 984
BstSCI	CCNGG	2 cut(s)	541, 982
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	138, 277, 487, 864
BstV2I	GAAGAC	3 cut(s)	78, 560, 902
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuI	GTATCC	1 cut(s)	781
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	213, 387
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	969
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	2 cut(s)	301, 327
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	6 cut(s)	38, 418, 460, 546, 625, 947
CviAII	CATG	2 cut(s)	343, 427
CviQI	GTAC	6 cut(s)	38, 418, 460, 546, 625, 947
DdeI	CTNAG	2 cut(s)	603, 618
DpnI	GATC	1 cut(s)	822
DpnII	GATC	1 cut(s)	820
DraI	TTTAAA	1 cut(s)	741
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	183, 732
Eco88I	CYCGRG	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	541, 982
EcoT38I	GRGCYC	2 cut(s)	183, 732
Esp3I	CGTCTC	1 cut(s)	759
FaeI	CATG	2 cut(s)	346, 430
FatI	CATG	2 cut(s)	342, 426
Fnu4HI	GCNGC	5 cut(s)	127, 266, 476, 803, 878
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	2 cut(s)	183, 732
Fsp4HI	GCNGC	5 cut(s)	127, 266, 476, 803, 878
FspBI	CTAG	2 cut(s)	825, 840
GlaI	GCGC	2 cut(s)	300, 326
GluI	GCNGC	5 cut(s)	127, 266, 476, 803, 878
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	783, 966
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	301, 327
Hin1II	CATG	2 cut(s)	346, 430
Hin6I	GCGC	2 cut(s)	299, 325
HinP1I	GCGC	2 cut(s)	299, 325
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	4 cut(s)	132, 158, 194, 955
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	28, 203, 998
Hpy166II	GTNNAC	3 cut(s)	387, 548, 750
Hpy188I	TCNGA	2 cut(s)	820, 902
Hpy188III	TCNNGA	3 cut(s)	427, 503, 725
Hpy8I	GTNNAC	3 cut(s)	387, 548, 750
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	500, 829
HpyCH4III	ACNGT	8 cut(s)	16, 94, 217, 334, 376, 382, 391, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 886
HpyF3I	CTNAG	2 cut(s)	603, 618
Hsp92II	CATG	2 cut(s)	346, 430
HspAI	GCGC	2 cut(s)	299, 325
Kzo9I	GATC	1 cut(s)	820
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	4 cut(s)	138, 277, 487, 864
LweI	GCATC	4 cut(s)	307, 432, 514, 604
MabI	ACCWGGT	1 cut(s)	541
MaeI	CTAG	2 cut(s)	825, 840
MaeIII	GTNAC	4 cut(s)	334, 376, 633, 844
MalI	GATC	1 cut(s)	822
MboI	GATC	1 cut(s)	820
MboII	GAAGA	9 cut(s)	23, 42, 45, 48, 78, 153, 491, 565, 902
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	2 cut(s)	183, 732
MluCI	AATT	7 cut(s)	144, 272, 365, 656, 701, 736, 974
MmeI	TCCRAC	3 cut(s)	447, 687, 880
MnlI	CCTC	6 cut(s)	34, 213, 225, 646, 969, 990
MseI	TTAA	2 cut(s)	740, 997
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	543, 984
MvaI	CCWGG	2 cut(s)	543, 984
MwoI	GCNNNNNNNGC	2 cut(s)	126, 886
NdeII	GATC	1 cut(s)	820
NlaIII	CATG	2 cut(s)	346, 430
NmuCI	GTSAC	2 cut(s)	334, 376
PaeR7I	CTCGAG	1 cut(s)	725
PagI	TCATGA	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	132, 158, 194, 955
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	128, 267, 477, 804, 879
Psp6I	CCWGG	2 cut(s)	541, 982
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	541, 982
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	6 cut(s)	39, 419, 461, 547, 626, 948
RsaNI	GTAC	6 cut(s)	38, 418, 460, 546, 625, 947
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	740, 997
SatI	GCNGC	5 cut(s)	127, 266, 476, 803, 878
Sau3AI	GATC	1 cut(s)	820
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	1 cut(s)	948
ScrFI	CCNGG	2 cut(s)	543, 984
SduI	GDGCHC	2 cut(s)	183, 732
SetI	ASST	9 cut(s)	205, 285, 312, 467, 544, 584, 879, 969, 988
SexAI	ACCWGGT	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	307, 432, 514, 604
SfcI	CTRYAG	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	725
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	716, 725
SmoI	CTYRAG	2 cut(s)	716, 725
Sse9I	AATT	7 cut(s)	144, 272, 365, 656, 701, 736, 974
SsiI	CCGC	1 cut(s)	802
SspMI	CTAG	2 cut(s)	825, 840
StyD4I	CCNGG	2 cut(s)	541, 982
TaaI	ACNGT	8 cut(s)	16, 94, 217, 334, 376, 382, 391, 459
TaqI	TCGA	1 cut(s)	726
TasI	AATT	7 cut(s)	144, 272, 365, 656, 701, 736, 974
TatI	WGTACW	4 cut(s)	417, 459, 624, 946
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	4 cut(s)	132, 158, 194, 955
Tru1I	TTAA	2 cut(s)	740, 997
Tru9I	TTAA	2 cut(s)	740, 997
TscAI	CASTG	2 cut(s)	220, 387
TseFI	GTSAC	2 cut(s)	334, 376
TseI	GCWGC	4 cut(s)	126, 265, 475, 877
Tsp45I	GTSAC	2 cut(s)	334, 376
TspDTI	ATGAA	5 cut(s)	48, 681, 714, 784, 848
TspRI	CASTG	2 cut(s)	220, 387
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	2 cut(s)	272, 736
XhoI	CTCGAG	1 cut(s)	725
XspI	CTAG	2 cut(s)	825, 840
ZrmI	AGTACT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.