Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

276070 .. 279058

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1002600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTATTGGTTGACGGTCAAGCCCTCTTTCATCTTACCCAAATTGTCTCCGCCGTCGTCGTCGTCTTCTTCTTCTTCTTCTGCACATTGTCGAGCTGGGCCGTGTTCTTCCTCTATCAGCTTCCCAATAAAGACGAGAAACAGAGGAAACAGACGCCCACTGAGACTTGATGCTTACGATTCCTCAAAGAGCGACACTCCCAATGGCTCTGCCGATTCCAACCCTCCCAACGCCACCACTCTGCCAAAGAGCAGGAGAGAAATTCTGTTGGAGTATGTCAAAAATGTGCAGCCAGAATTTATGGAGCTGTTTGTAAAAAGGGCGCCCCAGCAGGTTGTTGATGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCCCCACAATTTTTTGCAGTGACAGTGACCACCGTCGCAGAAAATCTTGCACAACTCATGTACAGTATCATGATGACTGGATATATGTTTCAGAATGCACAGTACAGGTTGGAACTGCAGCAAGGTTTAGAGCAGCCAGCTGCTCTTCCTGATGTGCAAGATACAAAGGATGCACCAGATTATGCACCCGGTACACAGAAGAACGTGTCAGGTGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAGAATAGATGCTAAGAAGTACATTGAGTTACTTGAAGCAGAGATTGAGGAACTAAATAACCAAGTTGGTAGGAAATCCACGGGCGGACAAAATGAATTGTTGGAATATCTGAAGTCTCTTGAACCCCAAAATTTAAAGGAATTGACGAGCAGTGCTGGAGACGATGTTGTGGTTGCGATGAATACATTCATCAAGCGGCTTTTGGCTGTTTCTGATCCTGGCCAAATGAAGACAAGTATGACAGAGACAACTGCACCAGAACTTGCGAAGCTGCTGTATTGGCTGATGGTTGTTGGATACAGCATTCGCAATATCGAAGTTCGTTTTGATATGGAACGAGTACTTGGGACTCCACCGAAGCTCGCAGAATTGCCTCCAGGAGAAAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

341

Amino Acids

37.77

Weight (kDa)

5.75

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	89 - 168	2.8e-24	Protein of unknown function (DUF760)
DUF760	PF05542	242 - 325	1.3e-19	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	3 cut(s)	50, 714, 826
AclI	AACGTT	1 cut(s)	1017
AclWI	GGATC	1 cut(s)	839
AcoI	YGGCCR	1 cut(s)	850
AcsI	RAATTY	3 cut(s)	261, 296, 760
AcuI	CTGAAG	1 cut(s)	761
AcyI	GRCGYC	2 cut(s)	154, 323
AfaI	GTAC	5 cut(s)	443, 485, 574, 650, 972
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	665, 752
AjnI	CCWGG	2 cut(s)	847, 1006
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AluBI	AGCT	6 cut(s)	95, 120, 307, 521, 901, 991
AluI	AGCT	6 cut(s)	95, 120, 307, 521, 901, 991
Alw26I	GTCTC	5 cut(s)	51, 157, 750, 783, 869
AlwI	GGATC	1 cut(s)	839
AoxI	GGCC	3 cut(s)	98, 622, 850
ApeKI	GCWGC	5 cut(s)	289, 499, 514, 521, 901
ApoI	RAATTY	3 cut(s)	261, 296, 760
Asp700I	GAANNNNTTC	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	325, 351
AspS9I	GGNCC	2 cut(s)	98, 623
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	57, 866
BbvI	GCAGC	5 cut(s)	301, 508, 511, 526, 888
BccI	CCATC	1 cut(s)	910
BceAI	ACGGC	2 cut(s)	37, 85
BciT130I	CCWGG	2 cut(s)	849, 1008
BciVI	GTATCC	1 cut(s)	920
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	5 cut(s)	51, 157, 750, 783, 869
BfmI	CTRYAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	6 cut(s)	290, 500, 515, 522, 827, 902
BlsI	GCNGC	6 cut(s)	291, 501, 516, 523, 828, 903
BmcAI	AGTACT	1 cut(s)	972
Bme1390I	CCNGG	3 cut(s)	570, 849, 1008
BmgT120I	GGNCC	2 cut(s)	98, 623
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	570, 849, 1008
BmsI	GCATC	4 cut(s)	160, 331, 541, 628
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	57, 866
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	807, 990
BpuMI	CCSGG	1 cut(s)	570
BsaHI	GRCGYC	2 cut(s)	154, 323
BsaJI	CCNNGG	1 cut(s)	708
BsaXI	ACNNNNNCTCC	3 cut(s)	780, 810, 1002
Bse1I	ACTGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	849, 1008
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	556
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	152, 618
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	5 cut(s)	301, 508, 511, 526, 888
BseYI	CCCAGC	2 cut(s)	95, 327
BsgI	GTGCAG	3 cut(s)	66, 308, 867
BshFI	GGCC	3 cut(s)	100, 624, 852
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	991
BsmAI	GTCTC	5 cut(s)	51, 157, 750, 783, 869
BsmBI	CGTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	991
BsmI	GAATGC	2 cut(s)	481, 933
BsnI	GGCC	3 cut(s)	100, 624, 852
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	844
BspACI	CCGC	3 cut(s)	50, 714, 826
BspANI	GGCC	3 cut(s)	100, 624, 852
BspCNI	CTCAG	2 cut(s)	153, 619
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	839
BspQI	GCTCTTC	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	1 cut(s)	844
BssNI	GRCGYC	2 cut(s)	154, 323
Bst2UI	CCWGG	2 cut(s)	849, 1008
Bst4CI	ACNGT	6 cut(s)	16, 358, 406, 415, 446, 483
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	2 cut(s)	154, 323
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	519, 993
BstDEI	CTNAG	3 cut(s)	161, 627, 642
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	325, 351
BstKTI	GATC	1 cut(s)	847
BstMAI	GTCTC	5 cut(s)	51, 157, 750, 783, 869
BstMBI	GATC	1 cut(s)	844
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNI	CCWGG	2 cut(s)	849, 1008
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	568, 847, 1006
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	5 cut(s)	301, 508, 511, 526, 888
BstV2I	GAAGAC	2 cut(s)	57, 866
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	3 cut(s)	100, 624, 852
BtgI	CCRYGG	1 cut(s)	708
BtgZI	GCGATG	1 cut(s)	821
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	2 cut(s)	405, 787
BtsIMutI	CAGTG	5 cut(s)	158, 363, 405, 411, 787
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	519, 993
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	2 cut(s)	325, 351
Cfr13I	GGNCC	2 cut(s)	98, 623
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	5 cut(s)	442, 484, 573, 649, 971
CviAII	CATG	3 cut(s)	367, 439, 451
CviQI	GTAC	5 cut(s)	442, 484, 573, 649, 971
DdeI	CTNAG	3 cut(s)	161, 627, 642
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	1 cut(s)	846
DpnII	GATC	1 cut(s)	844
DraI	TTTAAA	1 cut(s)	765
EaeI	YGGCCR	1 cut(s)	850
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	2 cut(s)	39, 729
Eco57I	CTGAAG	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	847, 1006
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	783
FaeI	CATG	3 cut(s)	370, 442, 454
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	3 cut(s)	366, 438, 450
Fnu4HI	GCNGC	6 cut(s)	290, 500, 515, 522, 827, 902
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	6 cut(s)	290, 500, 515, 522, 827, 902
GlaI	GCGC	2 cut(s)	324, 350
GluI	GCNGC	6 cut(s)	290, 500, 515, 522, 827, 902
GsaI	CCCAGC	2 cut(s)	99, 331
GsuI	CTGGAG	2 cut(s)	807, 990
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	100, 624, 852
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	2 cut(s)	325, 351
Hin1I	GRCGYC	2 cut(s)	154, 323
Hin1II	CATG	3 cut(s)	370, 442, 454
Hin6I	GCGC	2 cut(s)	323, 349
HinP1I	GCGC	2 cut(s)	323, 349
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	179, 215, 979
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	2 cut(s)	12, 575
Hpy188I	TCNGA	3 cut(s)	474, 741, 844
Hpy188III	TCNNGA	3 cut(s)	451, 530, 749
Hpy8I	GTNNAC	2 cut(s)	12, 575
Hpy99I	CGWCG	4 cut(s)	58, 61, 64, 419
HpyCH4III	ACNGT	6 cut(s)	16, 358, 406, 415, 446, 483
HpyCH4IV	ACGT	2 cut(s)	585, 1017
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	3 cut(s)	161, 627, 642
HpySE526I	ACGT	2 cut(s)	585, 1017
Hsp92I	GRCGYC	2 cut(s)	154, 323
Hsp92II	CATG	3 cut(s)	370, 442, 454
HspAI	GCGC	2 cut(s)	323, 349
KasI	GGCGCC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	844
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	5 cut(s)	301, 508, 511, 526, 888
LweI	GCATC	4 cut(s)	160, 331, 541, 628
MaeII	ACGT	2 cut(s)	585, 1017
MaeIII	GTNAC	4 cut(s)	358, 400, 406, 657
MalI	GATC	1 cut(s)	846
MboI	GATC	1 cut(s)	844
MboII	GAAGA	9 cut(s)	57, 60, 63, 66, 69, 99, 518, 592, 871
MlsI	TGGCCA	1 cut(s)	852
MluCI	AATT	8 cut(s)	41, 261, 296, 389, 725, 760, 770, 998
MluNI	TGGCCA	1 cut(s)	852
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	973
MmeI	TCCRAC	5 cut(s)	243, 249, 471, 711, 904
MnlI	CCTC	7 cut(s)	34, 121, 137, 193, 234, 670, 1014
Mox20I	TGGCCA	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	852
MseI	TTAA	2 cut(s)	764, 1021
Msp20I	TGGCCA	1 cut(s)	852
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	3 cut(s)	570, 849, 1008
Mva1269I	GAATGC	2 cut(s)	481, 933
MvaI	CCWGG	2 cut(s)	849, 1008
MwoI	GCNNNNNNNGC	1 cut(s)	910
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	1 cut(s)	844
NlaIII	CATG	3 cut(s)	370, 442, 454
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	3 cut(s)	358, 400, 406
PagI	TCATGA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	531
PctI	GAATGC	2 cut(s)	481, 933
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	179, 215
PfoI	TCCNGGA	1 cut(s)	1006
PkrI	GCNGC	6 cut(s)	291, 501, 516, 523, 828, 903
PleI	GAGTC	1 cut(s)	973
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	973
PshAI	GACNNNNGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	1017
Psp6I	CCWGG	2 cut(s)	847, 1006
PspFI	CCCAGC	2 cut(s)	95, 327
PspGI	CCWGG	2 cut(s)	847, 1006
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	98, 623
PstI	CTGCAG	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	5 cut(s)	443, 485, 574, 650, 972
RsaNI	GTAC	5 cut(s)	442, 484, 573, 649, 971
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	764, 1021
SatI	GCNGC	6 cut(s)	290, 500, 515, 522, 827, 902
Sau3AI	GATC	1 cut(s)	844
Sau96I	GGNCC	2 cut(s)	98, 623
ScaI	AGTACT	1 cut(s)	972
SchI	GAGTC	1 cut(s)	973
ScrFI	CCNGG	3 cut(s)	570, 849, 1008
SfaNI	GCATC	4 cut(s)	160, 331, 541, 628
SfcI	CTRYAG	1 cut(s)	497
SfoI	GGCGCC	1 cut(s)	324
Sse9I	AATT	8 cut(s)	41, 261, 296, 389, 725, 760, 770, 998
SsiI	CCGC	3 cut(s)	50, 714, 826
SspDI	GGCGCC	1 cut(s)	322
StyD4I	CCNGG	3 cut(s)	568, 847, 1006
TaaI	ACNGT	6 cut(s)	16, 358, 406, 415, 446, 483
TaiI	ACGT	2 cut(s)	588, 1020
TaqI	TCGA	2 cut(s)	91, 945
TasI	AATT	8 cut(s)	41, 261, 296, 389, 725, 760, 770, 998
TatI	WGTACW	4 cut(s)	441, 483, 648, 970
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	2 cut(s)	179, 215
Tru1I	TTAA	2 cut(s)	764, 1021
Tru9I	TTAA	2 cut(s)	764, 1021
TscAI	CASTG	5 cut(s)	165, 363, 405, 411, 787
TseFI	GTSAC	3 cut(s)	358, 400, 406
TseI	GCWGC	5 cut(s)	289, 499, 514, 521, 901
Tsp45I	GTSAC	3 cut(s)	358, 400, 406
TspDTI	ATGAA	5 cut(s)	19, 738, 808, 824, 872
TspRI	CASTG	5 cut(s)	165, 363, 405, 411, 787
XapI	RAATTY	3 cut(s)	261, 296, 760
XmnI	GAANNNNTTC	1 cut(s)	815
ZrmI	AGTACT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.