Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023816.1

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

772 .. 3464

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgtattccttgacggtgaagccctcttttcttcttgtaccaaaatcatcttcttcttcatctgctcattcttgggtcgggtcttcttcttctacggttagtttccgaataaagaccaaaagcaggggcagcagaatcagtttgagaattgcggcttacgattcttccaagaacaaagatgggctcaactccggtgattccaaacctcccaacggcactgtgccaaagagcaggagggatatactattggagtatgtaaaaaatgtgcagcctgaatttatggagctgtttgttaagagagcaccccagcaggtggttgatgcaatgcgccaaactgtgacaaacatgattggaacactacccccacaattttttacagtcacagtgtccacctacaggttggaactgcagcaaagtttagagccagttgctcttcctgaagggcaagagaaaaaggatgcaccagagtatgcacctggtacacagaagtcgaatgtgtcaggggaagttattaggtggaataatgtttctggccctgagaaaatagatgctaagaagtacatagagttacttgaagcagagattgaggaattgaataatgaagttggtaggaaatctgcaaatggacaaaatgaattgttggagtatctcaagtctctcgagccccaaaatttaaaggagttgactagtactgctggagacgatgttgtggttgcaatggatacattcatcaagcggcttttggctgtttcagatcctagccaaatgaaggctagtgtaacatcaacaactgcaccagaacttgcaaagctgctttattggctaatggtagtcggatatagtcttcgcaacattgaagttcgttttgatatggaacgagtacttgggaatcctccaaagctcgcagaattgcctccaggtgaaaatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

310

Amino Acids

34.31

Weight (kDa)

7.75

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	2 cut(s)	152, 736
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	2 cut(s)	275, 670
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	5 cut(s)	39, 481, 560, 691, 882
AfiI	CCNNNNNNNGG	5 cut(s)	123, 212, 313, 396, 769
AgsI	TTSAA	3 cut(s)	575, 595, 857
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	2 cut(s)	475, 916
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 867, 899
AluBI	AGCT	3 cut(s)	286, 811, 901
AluI	AGCT	3 cut(s)	286, 811, 901
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	660, 693
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	4 cut(s)	129, 268, 409, 811
ApoI	RAATTY	2 cut(s)	275, 670
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	3 cut(s)	28, 206, 932
AvaI	CYCGRG	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	186, 666
BbsI	GAAGAC	2 cut(s)	75, 836
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	141, 280, 421, 798
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	477, 918
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	2 cut(s)	660, 693
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	687, 759, 774
BfmI	CTRYAG	2 cut(s)	394, 407
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	6 cut(s)	130, 153, 269, 410, 737, 812
BlsI	GCNGC	6 cut(s)	131, 154, 270, 411, 738, 813
BmcAI	AGTACT	2 cut(s)	691, 882
Bme1390I	CCNGG	2 cut(s)	477, 918
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	533
BmrFI	CCNGG	2 cut(s)	477, 918
BmsI	GCATC	3 cut(s)	310, 448, 538
BpiI	GAAGAC	2 cut(s)	75, 836
BpmI	CTGGAG	2 cut(s)	717, 900
BpuEI	CTTGAG	1 cut(s)	635
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 212, 313, 396, 769
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	330, 723
BseBI	CCWGG	2 cut(s)	477, 918
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	5 cut(s)	123, 212, 313, 396, 769
BseMI	GCAATG	2 cut(s)	330, 723
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	141, 280, 421, 798
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	287, 777
BshFI	GGCC	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	5 cut(s)	123, 212, 313, 396, 769
BsmAI	GTCTC	2 cut(s)	660, 693
BsmBI	CGTCTC	1 cut(s)	693
BsnI	GGCC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	186, 304, 666
Bsp143I	GATC	1 cut(s)	754
BspACI	CCGC	2 cut(s)	152, 736
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	529
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	330, 723
BsrI	ACTGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	754
Bst2UI	CCWGG	2 cut(s)	477, 918
Bst4CI	ACNGT	6 cut(s)	16, 97, 220, 337, 379, 385
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	2 cut(s)	537, 552
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	2 cut(s)	660, 693
BstMBI	GATC	1 cut(s)	754
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 820
BstNI	CCWGG	2 cut(s)	477, 918
BstSCI	CCNGG	2 cut(s)	475, 916
BstSFI	CTRYAG	2 cut(s)	394, 407
BstV1I	GCAGC	4 cut(s)	141, 280, 421, 798
BstV2I	GAAGAC	2 cut(s)	75, 836
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	216, 390
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	903
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	533
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	5 cut(s)	38, 480, 559, 690, 881
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	5 cut(s)	38, 480, 559, 690, 881
DdeI	CTNAG	2 cut(s)	537, 552
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DraI	TTTAAA	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	186, 666
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	475, 916
EcoT38I	GRGCYC	2 cut(s)	186, 666
Esp3I	CGTCTC	1 cut(s)	693
FaeI	CATG	1 cut(s)	349
FaiI	YATR	8 cut(s)	242, 255, 281, 347, 471, 563, 840, 872
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	130, 153, 269, 410, 737, 812
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	186, 666
Fsp4HI	GCNGC	6 cut(s)	130, 153, 269, 410, 737, 812
FspBI	CTAG	3 cut(s)	687, 759, 774
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	6 cut(s)	130, 153, 269, 410, 737, 812
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	2 cut(s)	717, 900
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	4 cut(s)	135, 161, 197, 889
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	3 cut(s)	28, 206, 932
Hpy166II	GTNNAC	3 cut(s)	390, 482, 684
Hpy188I	TCNGA	3 cut(s)	107, 754, 836
Hpy188III	TCNNGA	2 cut(s)	437, 659
Hpy8I	GTNNAC	3 cut(s)	390, 482, 684
HpyAV	CCTTC	2 cut(s)	434, 763
HpyCH4III	ACNGT	6 cut(s)	16, 97, 220, 337, 379, 385
HpyCH4V	TGCA	9 cut(s)	268, 323, 409, 461, 473, 620, 716, 794, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 820
HpyF3I	CTNAG	2 cut(s)	537, 552
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	754
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	4 cut(s)	141, 280, 421, 798
LweI	GCATC	3 cut(s)	310, 448, 538
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	3 cut(s)	687, 759, 774
MaeIII	GTNAC	4 cut(s)	337, 379, 567, 778
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	3 cut(s)	186, 304, 666
MluCI	AATT	7 cut(s)	147, 275, 368, 590, 635, 670, 908
MmeI	TCCRAC	3 cut(s)	381, 621, 814
MnlI	CCTC	6 cut(s)	34, 216, 228, 580, 903, 924
MseI	TTAA	3 cut(s)	294, 674, 931
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	477, 918
MvaI	CCWGG	2 cut(s)	477, 918
MwoI	GCNNNNNNNGC	2 cut(s)	129, 820
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	337, 379
PaeR7I	CTCGAG	1 cut(s)	659
PaqCI	CACCTGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	135, 161, 197, 889
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	6 cut(s)	131, 154, 270, 411, 738, 813
Psp6I	CCWGG	2 cut(s)	475, 916
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	2 cut(s)	475, 916
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	5 cut(s)	39, 481, 560, 691, 882
RsaNI	GTAC	5 cut(s)	38, 480, 559, 690, 881
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	294, 674, 931
SatI	GCNGC	6 cut(s)	130, 153, 269, 410, 737, 812
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	1 cut(s)	533
ScaI	AGTACT	2 cut(s)	691, 882
ScrFI	CCNGG	2 cut(s)	477, 918
SduI	GDGCHC	3 cut(s)	186, 304, 666
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	3 cut(s)	310, 448, 538
SfcI	CTRYAG	2 cut(s)	394, 407
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	650, 659
SmoI	CTYRAG	2 cut(s)	650, 659
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	7 cut(s)	147, 275, 368, 590, 635, 670, 908
SsiI	CCGC	2 cut(s)	152, 736
SspMI	CTAG	3 cut(s)	687, 759, 774
StyD4I	CCNGG	2 cut(s)	475, 916
TaaI	ACNGT	6 cut(s)	16, 97, 220, 337, 379, 385
TaqI	TCGA	2 cut(s)	491, 660
TasI	AATT	7 cut(s)	147, 275, 368, 590, 635, 670, 908
TatI	WGTACW	3 cut(s)	558, 689, 880
TauI	GCSGC	2 cut(s)	155, 739
TfiI	GAWTC	4 cut(s)	135, 161, 197, 889
Tru1I	TTAA	3 cut(s)	294, 674, 931
Tru9I	TTAA	3 cut(s)	294, 674, 931
TscAI	CASTG	2 cut(s)	223, 390
TseFI	GTSAC	2 cut(s)	337, 379
TseI	GCWGC	4 cut(s)	129, 268, 409, 811
Tsp45I	GTSAC	2 cut(s)	337, 379
TspDTI	ATGAA	5 cut(s)	48, 615, 648, 718, 782
TspRI	CASTG	2 cut(s)	223, 390
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	2 cut(s)	275, 670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	3 cut(s)	687, 759, 774
ZrmI	AGTACT	2 cut(s)	691, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.