Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

65582269 .. 65586532

Gene Structure 4264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATACGTACAATTGGGATAAAGGAAAAGCATAGAGAAATTATGACATCCAACTGGGCAGGGTTTAAATATCATGTCTATATGAACAGAACGATTGCTAATAGTAATGGCATTCAAGGCTTCAAAGGATTGACTGCGAATTCCGGTACGGACAAAAAACTCGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTTTGTACAGTATCATGCTGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAGGAGAAAAAGTTTTTTTTTTTTTTTTTTTTCTGTTTCATTTCTTGTTATGAACTTCCTTTGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTACTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

300

Amino Acids

33.75

Weight (kDa)

5.34

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	50 - 113	1.7e-19	Protein of unknown function (DUF760)
DUF760	PF05542	202 - 285	2.2e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	139, 640
AfaI	GTAC	8 cut(s)	10, 148, 272, 314, 451, 530, 661, 852
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgsI	TTSAA	6 cut(s)	116, 124, 302, 545, 565, 827
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	445, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	837, 869
AluBI	AGCT	2 cut(s)	781, 871
AluI	AGCT	2 cut(s)	781, 871
Alw26I	GTCTC	2 cut(s)	630, 663
AlwI	GGATC	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	3 cut(s)	328, 764, 781
ApoI	RAATTY	2 cut(s)	139, 640
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	902
AvaI	CYCGRG	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	3 cut(s)	340, 768, 776
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	2 cut(s)	447, 888
BciVI	GTATCC	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	630, 663
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	3 cut(s)	657, 729, 744
BfmI	CTRYAG	2 cut(s)	326, 762
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	4 cut(s)	329, 707, 765, 782
BlsI	GCNGC	4 cut(s)	330, 708, 766, 783
BmcAI	AGTACT	2 cut(s)	661, 852
Bme1390I	CCNGG	2 cut(s)	447, 888
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	447, 888
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	160, 418, 508
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	2 cut(s)	687, 870
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse1I	ACTGG	4 cut(s)	59, 292, 344, 794
Bse3DI	GCAATG	2 cut(s)	180, 693
BseBI	CCWGG	2 cut(s)	447, 888
BseGI	GGATG	2 cut(s)	47, 433
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	2 cut(s)	180, 693
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	4 cut(s)	59, 292, 344, 794
BseXI	GCAGC	3 cut(s)	340, 768, 776
BshFI	GGCC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	2 cut(s)	630, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	724
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	1 cut(s)	499
BspMAI	CTGCAG	2 cut(s)	330, 766
BspPI	GGATC	1 cut(s)	719
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	2 cut(s)	180, 693
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	59, 292, 344, 794
BssMI	GATC	1 cut(s)	724
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	447, 888
Bst4CI	ACNGT	6 cut(s)	187, 229, 235, 244, 275, 312
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	2 cut(s)	507, 522
BstF5I	GGATG	2 cut(s)	47, 433
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	727
BstMAI	GTCTC	2 cut(s)	630, 663
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 773, 790
BstNI	CCWGG	2 cut(s)	447, 888
BstSCI	CCNGG	2 cut(s)	445, 886
BstSFI	CTRYAG	2 cut(s)	326, 762
BstSNI	TACGTA	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	340, 768, 776
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	47, 433
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	873
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	445
Csp6I	GTAC	8 cut(s)	9, 147, 271, 313, 450, 529, 660, 851
CviAII	CATG	3 cut(s)	74, 196, 280
CviQI	GTAC	8 cut(s)	9, 147, 271, 313, 450, 529, 660, 851
DdeI	CTNAG	2 cut(s)	507, 522
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
DraI	TTTAAA	2 cut(s)	67, 645
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco105I	TACGTA	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	445, 886
EcoT38I	GRGCYC	1 cut(s)	636
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	3 cut(s)	77, 199, 283
FatI	CATG	3 cut(s)	73, 195, 279
Fnu4HI	GCNGC	4 cut(s)	329, 707, 765, 782
FokI	GGATG	2 cut(s)	34, 440
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	329, 707, 765, 782
FspBI	CTAG	3 cut(s)	657, 729, 744
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	4 cut(s)	329, 707, 765, 782
GsuI	CTGGAG	2 cut(s)	687, 870
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	77, 199, 283
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	1 cut(s)	859
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	3 cut(s)	240, 452, 654
Hpy188I	TCNGA	2 cut(s)	724, 806
Hpy188III	TCNNGA	2 cut(s)	356, 629
Hpy8I	GTNNAC	3 cut(s)	240, 452, 654
HpyAV	CCTTC	2 cut(s)	353, 733
HpyCH4III	ACNGT	6 cut(s)	187, 229, 235, 244, 275, 312
HpyCH4IV	ACGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 773, 790
HpyF3I	CTNAG	2 cut(s)	507, 522
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	77, 199, 283
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	357
Lsp1109I	GCAGC	3 cut(s)	340, 768, 776
LweI	GCATC	3 cut(s)	160, 418, 508
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	3 cut(s)	657, 729, 744
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	4 cut(s)	187, 229, 537, 748
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	2 cut(s)	344, 806
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	8 cut(s)	12, 39, 139, 218, 560, 605, 640, 878
MmeI	TCCRAC	4 cut(s)	75, 300, 591, 784
MnlI	CCTC	3 cut(s)	550, 873, 894
MseI	TTAA	3 cut(s)	66, 644, 901
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	447, 888
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	447, 888
MwoI	GCNNNNNNNGC	3 cut(s)	117, 773, 790
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	3 cut(s)	77, 199, 283
NmuCI	GTSAC	2 cut(s)	187, 229
PaeR7I	CTCGAG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	859
PkrI	GCNGC	4 cut(s)	330, 708, 766, 783
Ppu21I	YACGTR	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	445, 886
PspGI	CCWGG	2 cut(s)	445, 886
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	2 cut(s)	330, 766
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	8 cut(s)	10, 148, 272, 314, 451, 530, 661, 852
RsaNI	GTAC	8 cut(s)	9, 147, 271, 313, 450, 529, 660, 851
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	66, 644, 901
SatI	GCNGC	4 cut(s)	329, 707, 765, 782
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	2 cut(s)	661, 852
ScrFI	CCNGG	2 cut(s)	447, 888
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	7 cut(s)	10, 320, 448, 488, 783, 873, 892
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	160, 418, 508
SfcI	CTRYAG	2 cut(s)	326, 762
Sfr274I	CTCGAG	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	620, 629
SmoI	CTYRAG	2 cut(s)	620, 629
SnaBI	TACGTA	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	8 cut(s)	12, 39, 139, 218, 560, 605, 640, 878
SsiI	CCGC	1 cut(s)	706
SspMI	CTAG	3 cut(s)	657, 729, 744
StyD4I	CCNGG	2 cut(s)	445, 886
TaaI	ACNGT	6 cut(s)	187, 229, 235, 244, 275, 312
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	461, 630
TasI	AATT	8 cut(s)	12, 39, 139, 218, 560, 605, 640, 878
TatI	WGTACW	5 cut(s)	270, 312, 528, 659, 850
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	1 cut(s)	859
Tru1I	TTAA	3 cut(s)	66, 644, 901
Tru9I	TTAA	3 cut(s)	66, 644, 901
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	187, 229
TseI	GCWGC	3 cut(s)	328, 764, 781
Tsp45I	GTSAC	2 cut(s)	187, 229
TspDTI	ATGAA	7 cut(s)	98, 391, 429, 585, 618, 688, 752
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	139, 640
XhoI	CTCGAG	1 cut(s)	629
XspI	CTAG	3 cut(s)	657, 729, 744
ZrmI	AGTACT	2 cut(s)	661, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.