Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

5967051 .. 5970263

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTTTTCTTCTTCTTCTTCTACTACTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCAGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTTTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCTGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGAAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGACAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGACGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTTGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTTGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

339

Amino Acids

37.43

Weight (kDa)

6.09

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	87 - 168	5.2e-25	Protein of unknown function (DUF760)
DUF760	PF05542	240 - 323	4.1e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	2 cut(s)	167, 820
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	2 cut(s)	290, 754
AfaI	GTAC	7 cut(s)	39, 437, 479, 565, 644, 775, 966
AfiI	CCNNNNNNNGG	4 cut(s)	138, 227, 328, 853
AgsI	TTSAA	4 cut(s)	467, 659, 679, 941
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	2 cut(s)	559, 1000
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 951, 983
AluBI	AGCT	3 cut(s)	301, 895, 985
AluI	AGCT	3 cut(s)	301, 895, 985
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	744, 777
AlwI	GGATC	1 cut(s)	833
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	144, 283, 895
ApoI	RAATTY	2 cut(s)	290, 754
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	28, 1016
BanII	GRGCYC	2 cut(s)	201, 750
BbsI	GAAGAC	2 cut(s)	578, 920
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	156, 295, 882
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	561, 1002
BciVI	GTATCC	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	744, 777
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	3 cut(s)	771, 843, 858
BfmI	CTRYAG	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	145, 168, 284, 821, 896
BlsI	GCNGC	5 cut(s)	146, 169, 285, 822, 897
BmcAI	AGTACT	2 cut(s)	775, 966
Bme1390I	CCNGG	2 cut(s)	561, 1002
BmgT120I	GGNCC	1 cut(s)	617
BmrFI	CCNGG	2 cut(s)	561, 1002
BmsI	GCATC	3 cut(s)	325, 532, 622
BpiI	GAAGAC	2 cut(s)	578, 920
BpmI	CTGGAG	3 cut(s)	190, 801, 984
BpuEI	CTTGAG	2 cut(s)	719, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 227, 328, 853
Bse1I	ACTGG	3 cut(s)	207, 457, 509
Bse3DI	GCAATG	2 cut(s)	345, 807
BseBI	CCWGG	2 cut(s)	561, 1002
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	4 cut(s)	138, 227, 328, 853
BseMI	GCAATG	2 cut(s)	345, 807
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	3 cut(s)	207, 457, 509
BseXI	GCAGC	3 cut(s)	156, 295, 882
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	2 cut(s)	302, 861
BshFI	GGCC	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	319
BslI	CCNNNNNNNGG	4 cut(s)	138, 227, 328, 853
BsmAI	GTCTC	2 cut(s)	744, 777
BsmBI	CGTCTC	1 cut(s)	777
BsnI	GGCC	1 cut(s)	618
Bsp1286I	GDGCHC	3 cut(s)	201, 319, 750
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	838
BspACI	CCGC	2 cut(s)	167, 820
BspANI	GGCC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	613
BspHI	TCATGA	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	345, 807
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	207, 457, 509
BssMI	GATC	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	561, 1002
Bst4CI	ACNGT	9 cut(s)	16, 112, 235, 352, 394, 400, 409, 440, 477
Bst6I	CTCTTC	1 cut(s)	522
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	2 cut(s)	621, 636
BstF5I	GGATG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	1 cut(s)	841
BstMAI	GTCTC	2 cut(s)	744, 777
BstMBI	GATC	1 cut(s)	838
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 904
BstNI	CCWGG	2 cut(s)	561, 1002
BstSCI	CCNGG	2 cut(s)	559, 1000
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	156, 295, 882
BstV2I	GAAGAC	2 cut(s)	578, 920
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	3 cut(s)	214, 231, 405
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	987
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	559
Csp6I	GTAC	7 cut(s)	38, 436, 478, 564, 643, 774, 965
CviAII	CATG	2 cut(s)	361, 445
CviQI	GTAC	7 cut(s)	38, 436, 478, 564, 643, 774, 965
DdeI	CTNAG	2 cut(s)	621, 636
DpnI	GATC	1 cut(s)	840
DpnII	GATC	1 cut(s)	838
DraI	TTTAAA	1 cut(s)	759
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	201, 750
EcoRII	CCWGG	2 cut(s)	559, 1000
EcoT38I	GRGCYC	2 cut(s)	201, 750
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	2 cut(s)	364, 448
FatI	CATG	2 cut(s)	360, 444
Fnu4HI	GCNGC	5 cut(s)	145, 168, 284, 821, 896
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	2 cut(s)	201, 750
Fsp4HI	GCNGC	5 cut(s)	145, 168, 284, 821, 896
FspBI	CTAG	3 cut(s)	771, 843, 858
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	5 cut(s)	145, 168, 284, 821, 896
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	3 cut(s)	190, 801, 984
HaeIII	GGCC	1 cut(s)	618
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	364, 448
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	4 cut(s)	150, 176, 212, 973
HphI	GGTGA	2 cut(s)	28, 1016
Hpy166II	GTNNAC	3 cut(s)	405, 566, 768
Hpy188I	TCNGA	2 cut(s)	838, 920
Hpy188III	TCNNGA	3 cut(s)	445, 521, 743
Hpy8I	GTNNAC	3 cut(s)	405, 566, 768
HpyAV	CCTTC	2 cut(s)	518, 847
HpyCH4III	ACNGT	9 cut(s)	16, 112, 235, 352, 394, 400, 409, 440, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 904
HpyF3I	CTNAG	2 cut(s)	621, 636
Hsp92II	CATG	2 cut(s)	364, 448
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	838
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	3 cut(s)	156, 295, 882
LweI	GCATC	3 cut(s)	325, 532, 622
MabI	ACCWGGT	1 cut(s)	559
MaeI	CTAG	3 cut(s)	771, 843, 858
MaeIII	GTNAC	4 cut(s)	352, 394, 651, 862
MalI	GATC	1 cut(s)	840
MboI	GATC	1 cut(s)	838
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	3 cut(s)	201, 319, 750
MluCI	AATT	7 cut(s)	162, 290, 383, 674, 719, 754, 992
MmeI	TCCRAC	3 cut(s)	465, 705, 898
MnlI	CCTC	6 cut(s)	34, 231, 243, 664, 987, 1008
MseI	TTAA	2 cut(s)	758, 1015
MspR9I	CCNGG	2 cut(s)	561, 1002
MvaI	CCWGG	2 cut(s)	561, 1002
MwoI	GCNNNNNNNGC	2 cut(s)	144, 904
NdeII	GATC	1 cut(s)	838
NlaIII	CATG	2 cut(s)	364, 448
NmuCI	GTSAC	2 cut(s)	352, 394
PagI	TCATGA	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	150, 176, 212, 973
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	5 cut(s)	146, 169, 285, 822, 897
Psp6I	CCWGG	2 cut(s)	559, 1000
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	2 cut(s)	559, 1000
PspPI	GGNCC	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	7 cut(s)	39, 437, 479, 565, 644, 775, 966
RsaNI	GTAC	7 cut(s)	38, 436, 478, 564, 643, 774, 965
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	758, 1015
SatI	GCNGC	5 cut(s)	145, 168, 284, 821, 896
Sau3AI	GATC	1 cut(s)	838
Sau96I	GGNCC	1 cut(s)	617
ScaI	AGTACT	2 cut(s)	775, 966
ScrFI	CCNGG	2 cut(s)	561, 1002
SduI	GDGCHC	3 cut(s)	201, 319, 750
SetI	ASST	9 cut(s)	223, 303, 330, 485, 562, 602, 897, 987, 1006
SexAI	ACCWGGT	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	325, 532, 622
SfcI	CTRYAG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	734, 743
SmoI	CTYRAG	2 cut(s)	734, 743
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	7 cut(s)	162, 290, 383, 674, 719, 754, 992
SsiI	CCGC	2 cut(s)	167, 820
SspMI	CTAG	3 cut(s)	771, 843, 858
StyD4I	CCNGG	2 cut(s)	559, 1000
TaaI	ACNGT	9 cut(s)	16, 112, 235, 352, 394, 400, 409, 440, 477
TasI	AATT	7 cut(s)	162, 290, 383, 674, 719, 754, 992
TatI	WGTACW	5 cut(s)	435, 477, 642, 773, 964
TauI	GCSGC	2 cut(s)	170, 823
TfiI	GAWTC	4 cut(s)	150, 176, 212, 973
Tru1I	TTAA	2 cut(s)	758, 1015
Tru9I	TTAA	2 cut(s)	758, 1015
TscAI	CASTG	3 cut(s)	214, 238, 405
TseFI	GTSAC	2 cut(s)	352, 394
TseI	GCWGC	3 cut(s)	144, 283, 895
Tsp45I	GTSAC	2 cut(s)	352, 394
TspDTI	ATGAA	5 cut(s)	51, 699, 732, 802, 866
TspRI	CASTG	3 cut(s)	214, 238, 405
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	290, 754
XspI	CTAG	3 cut(s)	771, 843, 858
ZrmI	AGTACT	2 cut(s)	775, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.