RchiOBHm_Chr6g0270451

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003449
Physical Location & Seq
Reverse (-)
28249882 .. 28252049
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24263

Sequence Viewer

Length: 573 bp
ATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTTGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCACAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCTGCTGTGTGTGGAATTGCAAATAATGGAAAGTTATAACGGGAAGGCTCAAGTAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

4.54

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 96 - 171 1.3e-17 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 5 cut(s) 5, 47, 133, 212, 343
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 4 cut(s) 35, 227, 247, 509
AhlI ACTAGT 1 cut(s) 338
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw26I GTCTC 2 cut(s) 312, 345
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 61, 446, 463
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 311
BanII GRGCYC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 3 cut(s) 73, 450, 458
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 312, 345
BcuI ACTAGT 1 cut(s) 338
BfaI CTAG 3 cut(s) 339, 411, 426
BfmI CTRYAG 2 cut(s) 59, 444
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 4 cut(s) 62, 389, 447, 464
BlsI GCNGC 4 cut(s) 63, 390, 448, 465
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 100, 190
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 287, 546
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 25, 77
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 25, 77
BseXI GCAGC 3 cut(s) 73, 450, 458
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 312, 345
BsmBI CGTCTC 1 cut(s) 345
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 388
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 63, 448
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 25, 77
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 8, 45
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 455
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 189, 204
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 2 cut(s) 312, 345
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 455, 472
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 2 cut(s) 59, 444
BstV1I GCAGC 3 cut(s) 73, 450, 458
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 115
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 5 cut(s) 4, 46, 132, 211, 342
CviAII CATG 1 cut(s) 13
CviQI GTAC 5 cut(s) 4, 46, 132, 211, 342
DdeI CTNAG 2 cut(s) 189, 204
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
DraI TTTAAA 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 1 cut(s) 16
FaiI YATR 7 cut(s) 14, 27, 29, 123, 215, 492, 549
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 4 cut(s) 62, 389, 447, 464
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 4 cut(s) 62, 389, 447, 464
FspBI CTAG 3 cut(s) 339, 411, 426
GluI GCNGC 4 cut(s) 62, 389, 447, 464
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
Hpy166II GTNNAC 2 cut(s) 134, 336
Hpy188I TCNGA 2 cut(s) 406, 488
Hpy188III TCNNGA 3 cut(s) 13, 89, 311
Hpy8I GTNNAC 2 cut(s) 134, 336
HpyAV CCTTC 3 cut(s) 86, 415, 550
HpyCH4III ACNGT 2 cut(s) 8, 45
HpyCH4V TGCA 9 cut(s) 41, 61, 113, 125, 272, 368, 446, 458, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 472
HpyF3I CTNAG 2 cut(s) 189, 204
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 90
Lsp1109I GCAGC 3 cut(s) 73, 450, 458
LweI GCATC 2 cut(s) 100, 190
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 3 cut(s) 339, 411, 426
MaeIII GTNAC 2 cut(s) 219, 430
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 77, 488
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 242, 287, 322, 527
MmeI TCCRAC 4 cut(s) 33, 242, 273, 466
MnlI CCTC 1 cut(s) 232
MseI TTAA 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 455, 472
NdeII GATC 1 cut(s) 406
NlaIII CATG 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 311
PagI TCATGA 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 90
PkrI GCNGC 4 cut(s) 63, 390, 448, 465
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 2 cut(s) 63, 448
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 5 cut(s) 5, 47, 133, 212, 343
RsaNI GTAC 5 cut(s) 4, 46, 132, 211, 342
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 4 cut(s) 62, 389, 447, 464
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 318
SetI ASST 4 cut(s) 53, 130, 170, 465
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 100, 190
SfcI CTRYAG 2 cut(s) 59, 444
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 3 cut(s) 302, 311, 561
SmoI CTYRAG 3 cut(s) 302, 311, 561
SpeI ACTAGT 1 cut(s) 338
Sse9I AATT 4 cut(s) 242, 287, 322, 527
SsiI CCGC 1 cut(s) 388
SspMI CTAG 3 cut(s) 339, 411, 426
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 8, 45
TaqI TCGA 2 cut(s) 143, 312
TasI AATT 4 cut(s) 242, 287, 322, 527
TatI WGTACW 4 cut(s) 3, 45, 210, 341
TauI GCSGC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseI GCWGC 3 cut(s) 61, 446, 463
TspDTI ATGAA 4 cut(s) 267, 300, 370, 434
XapI RAATTY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 3 cut(s) 339, 411, 426
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.