Rh6CG455100

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003449
Physical Location & Seq
Forward (+)
63071267 .. 63074707
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG455100.1

Sequence Viewer

Length: 831 bp
ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTTGTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCGGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTTTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCTGAAGGGCAAGAGAAAAAGGATGCACCAGATTATGCACCTGGTACACAGAAGATGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGTAAACAACTTCCCTTTTGTTCATGTGAATTGCCTTTTATGTTGTCTAGATTTTAGGTTCATGGCTAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

276

Amino Acids

30.76

Weight (kDa)

7.6

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 85 - 166 4.5e-25 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 2 cut(s) 141, 161
AcsI RAATTY 2 cut(s) 284, 748
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 5 cut(s) 39, 431, 473, 559, 638
AfiI CCNNNNNNNGG 3 cut(s) 132, 221, 322
AgsI TTSAA 3 cut(s) 461, 653, 673
AjnI CCWGG 1 cut(s) 553
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 738
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 3 cut(s) 138, 277, 487
ApoI RAATTY 2 cut(s) 284, 748
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 28, 215
AvaI CYCGRG 1 cut(s) 737
BanII GRGCYC 2 cut(s) 195, 744
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 150, 289, 499
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 2 cut(s) 803, 822
BfmI CTRYAG 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 4 cut(s) 139, 162, 278, 488
BlsI GCNGC 4 cut(s) 140, 163, 279, 489
Bme1390I CCNGG 1 cut(s) 555
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 611
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 3 cut(s) 319, 526, 616
BpiI GAAGAC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 713
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 221, 322
Bse1I ACTGG 2 cut(s) 451, 503
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 3 cut(s) 132, 221, 322
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 451, 503
BseXI GCAGC 3 cut(s) 150, 289, 499
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 132, 221, 322
BsmAI GTCTC 1 cut(s) 738
BsnI GGCC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 3 cut(s) 195, 313, 744
Bsp1407I TGTACA 1 cut(s) 429
BspACI CCGC 2 cut(s) 141, 161
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 607
BspHI TCATGA 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 489
BspMI ACCTGC 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 2 cut(s) 451, 503
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 9 cut(s) 16, 106, 229, 346, 388, 394, 403, 434, 471
Bst6I CTCTTC 1 cut(s) 516
BstAUI TGTACA 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 615, 630
BstF5I GGATG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 738
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 485
BstV1I GCAGC 3 cut(s) 150, 289, 499
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 612
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 225, 399
BveI ACCTGC 1 cut(s) 310
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 611
CsiI ACCWGGT 1 cut(s) 553
Csp6I GTAC 5 cut(s) 38, 430, 472, 558, 637
CviAII CATG 4 cut(s) 355, 439, 779, 817
CviJI RGCY 9 cut(s) 22, 164, 193, 280, 295, 502, 612, 742, 821
CviKI_1 RGCY 9 cut(s) 22, 164, 193, 280, 295, 502, 612, 742, 821
CviQI GTAC 5 cut(s) 38, 430, 472, 558, 637
DdeI CTNAG 2 cut(s) 615, 630
DraI TTTAAA 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco24I GRGCYC 2 cut(s) 195, 744
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 195, 744
FaeI CATG 4 cut(s) 358, 442, 782, 820
FatI CATG 4 cut(s) 354, 438, 778, 816
Fnu4HI GCNGC 4 cut(s) 139, 162, 278, 488
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 2 cut(s) 195, 744
Fsp4HI GCNGC 4 cut(s) 139, 162, 278, 488
FspBI CTAG 2 cut(s) 803, 822
GlaI GCGC 1 cut(s) 338
GluI GCNGC 4 cut(s) 139, 162, 278, 488
GsaI CCCAGC 1 cut(s) 319
HaeIII GGCC 1 cut(s) 612
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 339
Hin1II CATG 4 cut(s) 358, 442, 782, 820
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 3 cut(s) 144, 170, 206
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 28, 215
Hpy166II GTNNAC 3 cut(s) 399, 560, 760
Hpy188III TCNNGA 4 cut(s) 439, 515, 737, 803
Hpy8I GTNNAC 3 cut(s) 399, 560, 760
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 9 cut(s) 16, 106, 229, 346, 388, 394, 403, 434, 471
HpyCH4V TGCA 8 cut(s) 277, 332, 419, 467, 487, 539, 551, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 615, 630
Hsp92II CATG 4 cut(s) 358, 442, 782, 820
HspAI GCGC 1 cut(s) 337
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 3 cut(s) 150, 289, 499
LweI GCATC 3 cut(s) 319, 526, 616
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 2 cut(s) 803, 822
MaeIII GTNAC 3 cut(s) 346, 388, 645
MhlI GDGCHC 3 cut(s) 195, 313, 744
MluCI AATT 7 cut(s) 156, 284, 377, 668, 713, 748, 784
MmeI TCCRAC 2 cut(s) 459, 699
MnlI CCTC 4 cut(s) 34, 225, 237, 658
MseI TTAA 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 138
NlaIII CATG 4 cut(s) 358, 442, 782, 820
NmuCI GTSAC 2 cut(s) 346, 388
PaeR7I CTCGAG 1 cut(s) 737
PagI TCATGA 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 516
PfeI GAWTC 3 cut(s) 144, 170, 206
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 4 cut(s) 140, 163, 279, 489
Psp6I CCWGG 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 1 cut(s) 553
PspPI GGNCC 1 cut(s) 611
PstI CTGCAG 1 cut(s) 489
RsaI GTAC 5 cut(s) 39, 431, 473, 559, 638
RsaNI GTAC 5 cut(s) 38, 430, 472, 558, 637
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 752
SatI GCNGC 4 cut(s) 139, 162, 278, 488
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 3 cut(s) 195, 313, 744
SetI ASST 8 cut(s) 217, 297, 324, 479, 556, 596, 759, 815
SexAI ACCWGGT 1 cut(s) 553
SfaNI GCATC 3 cut(s) 319, 526, 616
SfcI CTRYAG 1 cut(s) 485
Sfr274I CTCGAG 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 737
SmlI CTYRAG 2 cut(s) 728, 737
SmoI CTYRAG 2 cut(s) 728, 737
Sse9I AATT 7 cut(s) 156, 284, 377, 668, 713, 748, 784
SsiI CCGC 2 cut(s) 141, 161
SspMI CTAG 2 cut(s) 803, 822
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 9 cut(s) 16, 106, 229, 346, 388, 394, 403, 434, 471
TaqI TCGA 1 cut(s) 738
TasI AATT 7 cut(s) 156, 284, 377, 668, 713, 748, 784
TatI WGTACW 3 cut(s) 429, 471, 636
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 144, 170, 206
Tru1I TTAA 1 cut(s) 752
Tru9I TTAA 1 cut(s) 752
TscAI CASTG 2 cut(s) 232, 399
TseFI GTSAC 2 cut(s) 346, 388
TseI GCWGC 3 cut(s) 138, 277, 487
Tsp45I GTSAC 2 cut(s) 346, 388
TspDTI ATGAA 6 cut(s) 48, 584, 693, 726, 767, 805
TspRI CASTG 2 cut(s) 232, 399
Van91I CCANNNNNTGG 1 cut(s) 322
XapI RAATTY 2 cut(s) 284, 748
XbaI TCTAGA 1 cut(s) 802
XhoI CTCGAG 1 cut(s) 737
XspI CTAG 2 cut(s) 803, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.