Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

27548974 .. 27551789

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCTTCTTCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAATGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCAGTGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCTGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGTACTGCTGGAGCGACGATGTTGTTGGTTGCAATGGATACATTCATCAAGCGGCTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTTCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

328

Amino Acids

36.39

Weight (kDa)

5.91

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	83 - 161	7.5e-21	Protein of unknown function (DUF760)
DUF760	PF05542	233 - 313	1.8e-11	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	2 cut(s)	155, 791
AclWI	GGATC	1 cut(s)	803
AcsI	RAATTY	3 cut(s)	278, 733, 962
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	7 cut(s)	39, 416, 458, 544, 623, 743, 936
AfiI	CCNNNNNNNGG	4 cut(s)	126, 215, 316, 823
AgsI	TTSAA	4 cut(s)	446, 638, 658, 911
AjnI	CCWGG	2 cut(s)	538, 970
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 921, 953
AluBI	AGCT	3 cut(s)	289, 865, 955
AluI	AGCT	3 cut(s)	289, 865, 955
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	5 cut(s)	132, 271, 472, 848, 865
ApoI	RAATTY	3 cut(s)	278, 733, 962
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	3 cut(s)	28, 209, 986
AvaI	CYCGRG	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	189, 729
BbsI	GAAGAC	2 cut(s)	78, 890
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	5 cut(s)	144, 283, 484, 852, 860
BccI	CCATC	1 cut(s)	176
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	540, 972
BciVI	GTATCC	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	2 cut(s)	813, 828
BfmI	CTRYAG	2 cut(s)	470, 846
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	770
BisI	GCNGC	7 cut(s)	133, 156, 272, 473, 792, 849, 866
BlsI	GCNGC	7 cut(s)	134, 157, 273, 474, 793, 850, 867
BmcAI	AGTACT	2 cut(s)	743, 936
Bme1390I	CCNGG	2 cut(s)	540, 972
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	540, 972
BmsI	GCATC	3 cut(s)	313, 511, 601
BpiI	GAAGAC	2 cut(s)	78, 890
BpmI	CTGGAG	2 cut(s)	769, 954
BpuEI	CTTGAG	1 cut(s)	698
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 215, 316, 823
Bse1I	ACTGG	2 cut(s)	436, 488
Bse3DI	GCAATG	2 cut(s)	333, 778
BseBI	CCWGG	2 cut(s)	540, 972
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	4 cut(s)	126, 215, 316, 823
BseMI	GCAATG	2 cut(s)	333, 778
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	436, 488
BseXI	GCAGC	5 cut(s)	144, 283, 484, 852, 860
BseYI	CCCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	4 cut(s)	126, 215, 316, 823
BsmAI	GTCTC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	3 cut(s)	189, 307, 729
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	808
BspACI	CCGC	2 cut(s)	155, 791
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	423
BspMAI	CTGCAG	2 cut(s)	474, 850
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	803
BspQI	GCTCTTC	1 cut(s)	501
BsrDI	GCAATG	2 cut(s)	333, 778
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	436, 488
BssMI	GATC	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	540, 972
Bst4CI	ACNGT	7 cut(s)	16, 100, 223, 340, 382, 419, 456
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	2 cut(s)	600, 615
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	811
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	1 cut(s)	808
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 797, 857, 874
BstNI	CCWGG	2 cut(s)	540, 972
BstSCI	CCNGG	2 cut(s)	538, 970
BstSFI	CTRYAG	2 cut(s)	470, 846
BstV1I	GCAGC	5 cut(s)	144, 283, 484, 852, 860
BstV2I	GAAGAC	2 cut(s)	78, 890
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BsuI	GTATCC	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	219, 391
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	957
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	596
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	7 cut(s)	38, 415, 457, 543, 622, 742, 935
CviAII	CATG	2 cut(s)	349, 424
CviQI	GTAC	7 cut(s)	38, 415, 457, 543, 622, 742, 935
DdeI	CTNAG	2 cut(s)	600, 615
DpnI	GATC	1 cut(s)	810
DpnII	GATC	1 cut(s)	808
DraI	TTTAAA	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco24I	GRGCYC	2 cut(s)	189, 729
Eco57I	CTGAAG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	538, 970
EcoT38I	GRGCYC	2 cut(s)	189, 729
FaeI	CATG	2 cut(s)	352, 427
FatI	CATG	2 cut(s)	348, 423
Fnu4HI	GCNGC	7 cut(s)	133, 156, 272, 473, 792, 849, 866
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	2 cut(s)	189, 729
Fsp4HI	GCNGC	7 cut(s)	133, 156, 272, 473, 792, 849, 866
FspBI	CTAG	2 cut(s)	813, 828
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	7 cut(s)	133, 156, 272, 473, 792, 849, 866
GsaI	CCCAGC	1 cut(s)	313
GsuI	CTGGAG	2 cut(s)	769, 954
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	352, 427
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	4 cut(s)	138, 164, 200, 943
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	28, 209, 986
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	2 cut(s)	808, 890
Hpy188III	TCNNGA	3 cut(s)	424, 500, 722
Hpy8I	GTNNAC	1 cut(s)	545
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	2 cut(s)	497, 817
HpyCH4III	ACNGT	7 cut(s)	16, 100, 223, 340, 382, 419, 456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 797, 857, 874
HpyF3I	CTNAG	2 cut(s)	600, 615
Hsp92II	CATG	2 cut(s)	352, 427
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	808
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	2 cut(s)	286, 750
Lsp1109I	GCAGC	5 cut(s)	144, 283, 484, 852, 860
LweI	GCATC	3 cut(s)	313, 511, 601
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	2 cut(s)	813, 828
MaeIII	GTNAC	3 cut(s)	340, 630, 832
MalI	GATC	1 cut(s)	810
MboI	GATC	1 cut(s)	808
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	3 cut(s)	189, 307, 729
MluCI	AATT	7 cut(s)	150, 278, 371, 653, 698, 733, 962
MmeI	TCCRAC	3 cut(s)	444, 684, 868
MnlI	CCTC	6 cut(s)	34, 219, 231, 643, 957, 978
MseI	TTAA	2 cut(s)	737, 985
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	540, 972
MvaI	CCWGG	2 cut(s)	540, 972
MwoI	GCNNNNNNNGC	4 cut(s)	132, 797, 857, 874
NdeII	GATC	1 cut(s)	808
NlaIII	CATG	2 cut(s)	352, 427
NmuCI	GTSAC	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	722
PagI	TCATGA	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	138, 164, 200, 943
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	7 cut(s)	134, 157, 273, 474, 793, 850, 867
Psp6I	CCWGG	2 cut(s)	538, 970
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	2 cut(s)	538, 970
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	2 cut(s)	474, 850
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	7 cut(s)	39, 416, 458, 544, 623, 743, 936
RsaNI	GTAC	7 cut(s)	38, 415, 457, 543, 622, 742, 935
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	737, 985
SatI	GCNGC	7 cut(s)	133, 156, 272, 473, 792, 849, 866
Sau3AI	GATC	1 cut(s)	808
Sau96I	GGNCC	1 cut(s)	596
ScaI	AGTACT	2 cut(s)	743, 936
ScrFI	CCNGG	2 cut(s)	540, 972
SduI	GDGCHC	3 cut(s)	189, 307, 729
SetI	ASST	9 cut(s)	211, 291, 318, 464, 541, 581, 867, 957, 976
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	3 cut(s)	313, 511, 601
SfcI	CTRYAG	2 cut(s)	470, 846
Sfr274I	CTCGAG	1 cut(s)	722
SlaI	CTCGAG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	713, 722
SmoI	CTYRAG	2 cut(s)	713, 722
Sse9I	AATT	7 cut(s)	150, 278, 371, 653, 698, 733, 962
SsiI	CCGC	2 cut(s)	155, 791
SspMI	CTAG	2 cut(s)	813, 828
StyD4I	CCNGG	2 cut(s)	538, 970
TaaI	ACNGT	7 cut(s)	16, 100, 223, 340, 382, 419, 456
TaqI	TCGA	2 cut(s)	554, 723
TasI	AATT	7 cut(s)	150, 278, 371, 653, 698, 733, 962
TatI	WGTACW	5 cut(s)	414, 456, 621, 741, 934
TauI	GCSGC	2 cut(s)	158, 794
TfiI	GAWTC	4 cut(s)	138, 164, 200, 943
Tru1I	TTAA	2 cut(s)	737, 985
Tru9I	TTAA	2 cut(s)	737, 985
TscAI	CASTG	2 cut(s)	226, 391
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	5 cut(s)	132, 271, 472, 848, 865
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	51, 678, 711, 773, 836
TspRI	CASTG	2 cut(s)	226, 391
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	278, 733, 962
XhoI	CTCGAG	1 cut(s)	722
XspI	CTAG	2 cut(s)	813, 828
ZrmI	AGTACT	2 cut(s)	743, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.