Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009479.1

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

39935 .. 43143

Gene Structure 3209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009479.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgaagaccaaaagcaggggcagcagaatcagtttgagaattgcggcttacgattattccaagaacaacgatgggctcaactccggtgattctaaacctcccaacggcactgtgccaaagagcaggagggatatactattggagtatgtaaaaaatgtgcagcctgaatttatggagctgtttgtaaagagagcaccccagcaggtggttgatgcaatgcgccaaactgtgacaaacatgattggaacactacccccacaattttttacagtcagtgtccacagttgccgaaaatcttgcacacttatgtacagtatcatgatgactggatatatgtttcaaaatgcacagtacaggttggaactgcagcaaagtttagagccagttgctcttcctgaagggcaagagaaaaaggatgcaccagagtatgcacctggtacacagaagtcgaatgtgtcaggggaagttattaggtggaataatgtttctggccctgagaaaatagatgctaagaagtacatagagttacttgaagcagagattgaggaattgaataatgaagttggtaggaaatctgcaaatggacaaaatgaattgttggagtatctcaagtctctcgagccccaaaatttaaaggagttgactagtactgctggagacgatgttgtggttgcaatggatacattcatcaagcggcttttggctgtttcagatcctagccaaatgaaggaagaggaaacatttgtttccaaccgtgagatcatgaggcgagtaagaaatgtcaggcttcccgacttggccaagaaaggcggtcaaagaatacatgaaacagttcctctacctgtcatcaatggtaatccctcgaatattaaacatggctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

294

Amino Acids

33.1

Weight (kDa)

8.67

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	3 cut(s)	44, 694, 810
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	1 cut(s)	798
AcsI	RAATTY	2 cut(s)	167, 628
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	5 cut(s)	311, 353, 439, 518, 649
AfiI	CCNNNNNNNGG	4 cut(s)	15, 104, 205, 727
AgsI	TTSAA	3 cut(s)	341, 533, 553
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	618, 651
AlwI	GGATC	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	490, 798
ApeKI	GCWGC	3 cut(s)	21, 160, 367
ApoI	RAATTY	2 cut(s)	167, 628
Asp700I	GAANNNNTTC	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	800
BanII	GRGCYC	2 cut(s)	78, 624
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	33, 172, 379
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	618, 651
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	2 cut(s)	645, 717
BfmI	CTRYAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	5 cut(s)	22, 45, 161, 368, 695
BlsI	GCNGC	5 cut(s)	23, 46, 162, 369, 696
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	202, 406, 496
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	593
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 104, 205, 727
Bse1I	ACTGG	2 cut(s)	331, 383
Bse3DI	GCAATG	2 cut(s)	222, 681
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	4 cut(s)	15, 104, 205, 727
BseMI	GCAATG	2 cut(s)	222, 681
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	331, 383
BseXI	GCAGC	3 cut(s)	33, 172, 379
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	492, 800
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	4 cut(s)	15, 104, 205, 727
BsmAI	GTCTC	2 cut(s)	618, 651
BsmBI	CGTCTC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	492, 800
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	3 cut(s)	78, 196, 624
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	712, 759
BspACI	CCGC	3 cut(s)	44, 694, 810
BspANI	GGCC	2 cut(s)	492, 800
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	2 cut(s)	318, 762
BspLI	GGNNCC	1 cut(s)	880
BspMAI	CTGCAG	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	707
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	2 cut(s)	222, 681
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	331, 383
BssMI	GATC	2 cut(s)	712, 759
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	8 cut(s)	112, 229, 271, 284, 314, 351, 755, 832
Bst6I	CTCTTC	2 cut(s)	396, 726
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	495, 510
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	715, 762
BstMAI	GTCTC	2 cut(s)	618, 651
BstMBI	GATC	2 cut(s)	712, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	33, 172, 379
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	492, 800
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	108, 280
BveI	ACCTGC	1 cut(s)	193
CciI	TCATGA	2 cut(s)	318, 762
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	491
CsiI	ACCWGGT	1 cut(s)	433
Csp6I	GTAC	5 cut(s)	310, 352, 438, 517, 648
CviAII	CATG	5 cut(s)	238, 319, 763, 824, 875
CviQI	GTAC	5 cut(s)	310, 352, 438, 517, 648
DdeI	CTNAG	2 cut(s)	495, 510
DpnI	GATC	2 cut(s)	714, 761
DpnII	GATC	2 cut(s)	712, 759
DraI	TTTAAA	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	2 cut(s)	396, 726
EarI	CTCTTC	2 cut(s)	396, 726
Eco24I	GRGCYC	2 cut(s)	78, 624
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	2 cut(s)	78, 624
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	5 cut(s)	241, 322, 766, 827, 878
FatI	CATG	5 cut(s)	237, 318, 762, 823, 874
Fnu4HI	GCNGC	5 cut(s)	22, 45, 161, 368, 695
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	2 cut(s)	78, 624
Fsp4HI	GCNGC	5 cut(s)	22, 45, 161, 368, 695
FspBI	CTAG	2 cut(s)	645, 717
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	5 cut(s)	22, 45, 161, 368, 695
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	492, 800
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	5 cut(s)	241, 322, 766, 827, 878
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	27, 89
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	3 cut(s)	280, 440, 642
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	6 cut(s)	319, 395, 617, 763, 791, 882
Hpy8I	GTNNAC	3 cut(s)	280, 440, 642
HpyAV	CCTTC	2 cut(s)	392, 721
HpyCH4III	ACNGT	8 cut(s)	112, 229, 271, 284, 314, 351, 755, 832
HpyCH4V	TGCA	9 cut(s)	160, 215, 300, 347, 367, 419, 431, 578, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	495, 510
Hsp92II	CATG	5 cut(s)	241, 322, 766, 827, 878
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	712, 759
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	175, 884
Lsp1109I	GCAGC	3 cut(s)	33, 172, 379
LweI	GCATC	3 cut(s)	202, 406, 496
MabI	ACCWGGT	1 cut(s)	433
MaeI	CTAG	2 cut(s)	645, 717
MaeIII	GTNAC	2 cut(s)	229, 525
MalI	GATC	2 cut(s)	714, 761
MboI	GATC	2 cut(s)	712, 759
MboII	GAAGA	3 cut(s)	16, 383, 743
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	3 cut(s)	78, 196, 624
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	6 cut(s)	39, 167, 260, 548, 593, 628
MluNI	TGGCCA	1 cut(s)	800
MmeI	TCCRAC	3 cut(s)	339, 579, 774
MnlI	CCTC	7 cut(s)	108, 120, 538, 727, 759, 846, 871
Mox20I	TGGCCA	1 cut(s)	800
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	2 cut(s)	632, 870
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	800
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	21
NdeII	GATC	2 cut(s)	712, 759
NlaIII	CATG	5 cut(s)	241, 322, 766, 827, 878
NlaIV	GGNNCC	1 cut(s)	880
NmuCI	GTSAC	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	2 cut(s)	318, 762
PaqCI	CACCTGC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	27, 89
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	5 cut(s)	23, 46, 162, 369, 696
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	5 cut(s)	311, 353, 439, 518, 649
RsaNI	GTAC	5 cut(s)	310, 352, 438, 517, 648
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	632, 870
SatI	GCNGC	5 cut(s)	22, 45, 161, 368, 695
Sau3AI	GATC	2 cut(s)	712, 759
Sau96I	GGNCC	1 cut(s)	491
ScaI	AGTACT	1 cut(s)	649
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	78, 196, 624
SetI	ASST	7 cut(s)	100, 180, 207, 359, 436, 476, 844
SexAI	ACCWGGT	1 cut(s)	433
SfaNI	GCATC	3 cut(s)	202, 406, 496
SfcI	CTRYAG	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	608, 617
SmoI	CTYRAG	2 cut(s)	608, 617
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	6 cut(s)	39, 167, 260, 548, 593, 628
SsiI	CCGC	3 cut(s)	44, 694, 810
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	2 cut(s)	645, 717
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	8 cut(s)	112, 229, 271, 284, 314, 351, 755, 832
TaqI	TCGA	3 cut(s)	449, 618, 863
TasI	AATT	6 cut(s)	39, 167, 260, 548, 593, 628
TatI	WGTACW	4 cut(s)	309, 351, 516, 647
TauI	GCSGC	2 cut(s)	47, 697
TfiI	GAWTC	2 cut(s)	27, 89
Tru1I	TTAA	2 cut(s)	632, 870
Tru9I	TTAA	2 cut(s)	632, 870
TscAI	CASTG	2 cut(s)	115, 280
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	21, 160, 367
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	6 cut(s)	17, 573, 606, 676, 740, 840
TspRI	CASTG	2 cut(s)	115, 280
Van91I	CCANNNNNTGG	1 cut(s)	205
XapI	RAATTY	2 cut(s)	167, 628
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	2 cut(s)	645, 717
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.