Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

24521777 .. 24528195

Gene Structure 6419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGGGAAGGAGAGAAAAAGTGTAATGCTAGAGATTTGAAAAATGTGAAGATTTGCCAACCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTATTTATTTATTTATGTCTTTTTGGCAAGCAGCCGCGCGATTTTAATGTTGATGAGGAGGATAACTTACTTGCTCGTGCATGGATTGAGAGCATCGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCATAATGCAAAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTCGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

271

Amino Acids

31.01

Weight (kDa)

5.12

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	82 - 114	3.2e-09	Protein of unknown function (DUF760)
DUF760	PF05542	176 - 256	8.4e-17	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccII	CGCG	2 cut(s)	187, 189
AciI	CCGC	2 cut(s)	185, 619
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	113, 562
AfaI	GTAC	6 cut(s)	275, 317, 403, 452, 583, 765
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	40, 467, 487, 740
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	397, 799
AluBI	AGCT	3 cut(s)	124, 694, 784
AluI	AGCT	3 cut(s)	124, 694, 784
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	552, 585
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	2 cut(s)	551, 767
ApeKI	GCWGC	5 cut(s)	106, 181, 331, 677, 694
ApoI	RAATTY	2 cut(s)	113, 562
AspLEI	GCGC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	815
AvaI	CYCGRG	2 cut(s)	551, 767
BanII	GRGCYC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	5 cut(s)	118, 193, 343, 681, 689
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	399, 801
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	552, 585
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	4 cut(s)	30, 579, 642, 657
BfmI	CTRYAG	2 cut(s)	329, 675
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	7 cut(s)	107, 182, 185, 332, 620, 678, 695
BlsI	GCNGC	7 cut(s)	108, 183, 186, 333, 621, 679, 696
BmcAI	AGTACT	2 cut(s)	583, 765
Bme1390I	CCNGG	2 cut(s)	399, 801
BmeT110I	CYCGRG	2 cut(s)	551, 767
BmrFI	CCNGG	2 cut(s)	399, 801
BmsI	GCATC	2 cut(s)	252, 370
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	2 cut(s)	609, 783
BpuEI	CTTGAG	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	295, 347
BseBI	CCWGG	2 cut(s)	399, 801
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseNI	ACTGG	2 cut(s)	295, 347
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	118, 193, 343, 681, 689
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	187, 189
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	2 cut(s)	551, 767
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	552, 585
BsmBI	CGTCTC	1 cut(s)	585
BsoBI	CYCGRG	2 cut(s)	551, 767
Bsp1286I	GDGCHC	2 cut(s)	142, 558
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	637
BspACI	CCGC	2 cut(s)	185, 619
BspFNI	CGCG	2 cut(s)	187, 189
BspHI	TCATGA	1 cut(s)	282
BspMAI	CTGCAG	2 cut(s)	333, 679
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	295, 347
BssMI	GATC	1 cut(s)	637
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	399, 801
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	179, 786
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	187, 189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	2 cut(s)	552, 585
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 703
BstNI	CCWGG	2 cut(s)	399, 801
BstSCI	CCNGG	2 cut(s)	397, 799
BstSFI	CTRYAG	2 cut(s)	329, 675
BstUI	CGCG	2 cut(s)	187, 189
BstV1I	GCAGC	5 cut(s)	118, 193, 343, 681, 689
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuI	GTATCC	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	179, 786
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	397
Csp6I	GTAC	6 cut(s)	274, 316, 402, 451, 582, 764
CviAII	CATG	2 cut(s)	231, 283
CviQI	GTAC	6 cut(s)	274, 316, 402, 451, 582, 764
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	558
Eco88I	CYCGRG	2 cut(s)	551, 767
EcoRII	CCWGG	2 cut(s)	397, 799
EcoT38I	GRGCYC	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	2 cut(s)	234, 286
FatI	CATG	2 cut(s)	230, 282
Fnu4HI	GCNGC	7 cut(s)	107, 182, 185, 332, 620, 678, 695
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	7 cut(s)	107, 182, 185, 332, 620, 678, 695
FspBI	CTAG	4 cut(s)	30, 579, 642, 657
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	7 cut(s)	107, 182, 185, 332, 620, 678, 695
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	609, 783
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	234, 286
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	1 cut(s)	772
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	2 cut(s)	404, 576
Hpy188I	TCNGA	2 cut(s)	637, 719
Hpy188III	TCNNGA	4 cut(s)	283, 359, 551, 769
Hpy8I	GTNNAC	2 cut(s)	404, 576
HpyAV	CCTTC	2 cut(s)	356, 646
HpyCH4III	ACNGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 703
Hsp92II	CATG	2 cut(s)	234, 286
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	637
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	5 cut(s)	118, 193, 343, 681, 689
LweI	GCATC	2 cut(s)	252, 370
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	4 cut(s)	30, 579, 642, 657
MaeIII	GTNAC	2 cut(s)	459, 661
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	3 cut(s)	61, 347, 719
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	142, 558
MluCI	AATT	5 cut(s)	113, 482, 527, 562, 791
MmeI	TCCRAC	3 cut(s)	303, 513, 697
MnlI	CCTC	6 cut(s)	66, 199, 202, 472, 786, 807
MseI	TTAA	3 cut(s)	195, 566, 814
MspR9I	CCNGG	2 cut(s)	399, 801
MvaI	CCWGG	2 cut(s)	399, 801
MvnI	CGCG	2 cut(s)	187, 189
MwoI	GCNNNNNNNGC	2 cut(s)	686, 703
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	2 cut(s)	234, 286
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	772
PkrI	GCNGC	7 cut(s)	108, 183, 186, 333, 621, 679, 696
Psp6I	CCWGG	2 cut(s)	397, 799
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	397, 799
PstI	CTGCAG	2 cut(s)	333, 679
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	6 cut(s)	275, 317, 403, 452, 583, 765
RsaNI	GTAC	6 cut(s)	274, 316, 402, 451, 582, 764
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	195, 566, 814
SatI	GCNGC	7 cut(s)	107, 182, 185, 332, 620, 678, 695
Sau3AI	GATC	1 cut(s)	637
ScaI	AGTACT	2 cut(s)	583, 765
ScrFI	CCNGG	2 cut(s)	399, 801
SduI	GDGCHC	2 cut(s)	142, 558
SetI	ASST	8 cut(s)	126, 153, 323, 400, 440, 696, 786, 805
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	252, 370
SfcI	CTRYAG	2 cut(s)	329, 675
Sfr274I	CTCGAG	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	542, 551
SmoI	CTYRAG	2 cut(s)	542, 551
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	5 cut(s)	113, 482, 527, 562, 791
SsiI	CCGC	2 cut(s)	185, 619
SspMI	CTAG	4 cut(s)	30, 579, 642, 657
StyD4I	CCNGG	2 cut(s)	397, 799
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	413, 552
TasI	AATT	5 cut(s)	113, 482, 527, 562, 791
TatI	WGTACW	5 cut(s)	273, 315, 450, 581, 763
TauI	GCSGC	2 cut(s)	187, 622
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	3 cut(s)	195, 566, 814
Tru9I	TTAA	3 cut(s)	195, 566, 814
TseI	GCWGC	5 cut(s)	106, 181, 331, 677, 694
TspDTI	ATGAA	5 cut(s)	293, 507, 540, 601, 665
XapI	RAATTY	2 cut(s)	113, 562
XhoI	CTCGAG	1 cut(s)	551
XspI	CTAG	4 cut(s)	30, 579, 642, 657
ZrmI	AGTACT	2 cut(s)	583, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.