Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Forward (+)

41174133 .. 41177386

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTATTCCTTGACGACCAAAAGCAGGGACAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGCAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGTTCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCAGCAGAACTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGAAGAGGAAACATTTGTTTCCAACTGTGAGATCATGAGGCGAGTAAGAAATGTCAGGCTTCCCGACTTGGCCAAGAAAGGCGGTCAAAGAAAACATGAAACAGTTCCTCCACCTGTCATCAATGGTAATCCCTCGAATATTAAACATGGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

339

Amino Acids

37.94

Weight (kDa)

5.93

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	49 - 130	6.1e-25	Protein of unknown function (DUF760)
DUF760	PF05542	202 - 272	1.5e-10	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	214
AciI	CCGC	3 cut(s)	53, 706, 942
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	2 cut(s)	176, 640
AfaI	GTAC	6 cut(s)	323, 365, 451, 530, 661, 824
AfiI	CCNNNNNNNGG	5 cut(s)	24, 113, 214, 739, 865
AgsI	TTSAA	4 cut(s)	353, 416, 545, 565
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	445, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	2 cut(s)	187, 843
AluI	AGCT	2 cut(s)	187, 843
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	630, 663
AlwI	GGATC	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	2 cut(s)	502, 930
ApeKI	GCWGC	3 cut(s)	169, 379, 764
ApoI	RAATTY	2 cut(s)	176, 640
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	932
BanII	GRGCYC	2 cut(s)	87, 636
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	181, 391, 776
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	2 cut(s)	447, 860
BciVI	GTATCC	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	630, 663
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	3 cut(s)	657, 729, 744
BfmI	CTRYAG	2 cut(s)	377, 762
BfuAI	ACCTGC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	5 cut(s)	54, 170, 380, 707, 765
BlsI	GCNGC	5 cut(s)	55, 171, 381, 708, 766
BmcAI	AGTACT	2 cut(s)	661, 824
Bme1390I	CCNGG	2 cut(s)	447, 860
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	1012
BmrFI	CCNGG	2 cut(s)	447, 860
BmsI	GCATC	3 cut(s)	211, 418, 508
BpiI	GAAGAC	1 cut(s)	794
BpmI	CTGGAG	2 cut(s)	687, 842
BpuEI	CTTGAG	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	4 cut(s)	660, 690, 952, 982
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 113, 214, 739, 865
Bse1I	ACTGG	2 cut(s)	343, 395
Bse3DI	GCAATG	2 cut(s)	231, 693
BseBI	CCWGG	2 cut(s)	447, 860
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	5 cut(s)	24, 113, 214, 739, 865
BseMI	GCAATG	2 cut(s)	231, 693
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	343, 395
BseXI	GCAGC	3 cut(s)	181, 391, 776
BseYI	CCCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	504, 932
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	5 cut(s)	24, 113, 214, 739, 865
BsmAI	GTCTC	2 cut(s)	630, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	504, 932
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	87, 205, 636
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	724, 891
BspACI	CCGC	3 cut(s)	53, 706, 942
BspANI	GGCC	2 cut(s)	504, 932
BspCNI	CTCAG	1 cut(s)	499
BspHI	TCATGA	2 cut(s)	330, 894
BspLI	GGNNCC	1 cut(s)	1012
BspMAI	CTGCAG	2 cut(s)	381, 766
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	719
BspQI	GCTCTTC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	231, 693
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	343, 395
BssMI	GATC	2 cut(s)	724, 891
Bst2UI	CCWGG	2 cut(s)	447, 860
Bst4CI	ACNGT	9 cut(s)	121, 238, 280, 286, 295, 326, 363, 887, 964
Bst6I	CTCTTC	2 cut(s)	408, 858
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	845
BstDEI	CTNAG	2 cut(s)	507, 522
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	727, 894
BstMAI	GTCTC	2 cut(s)	630, 663
BstMBI	GATC	2 cut(s)	724, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 379
BstNI	CCWGG	2 cut(s)	447, 860
BstSCI	CCNGG	2 cut(s)	445, 858
BstSFI	CTRYAG	2 cut(s)	377, 762
BstV1I	GCAGC	3 cut(s)	181, 391, 776
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	2 cut(s)	504, 932
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	117, 291
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	845
CciI	TCATGA	2 cut(s)	330, 894
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	445
Csp6I	GTAC	6 cut(s)	322, 364, 450, 529, 660, 823
CviAII	CATG	5 cut(s)	247, 331, 895, 956, 1007
CviQI	GTAC	6 cut(s)	322, 364, 450, 529, 660, 823
DdeI	CTNAG	2 cut(s)	507, 522
DpnI	GATC	2 cut(s)	726, 893
DpnII	GATC	2 cut(s)	724, 891
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	930
Eam1104I	CTCTTC	2 cut(s)	408, 858
EarI	CTCTTC	2 cut(s)	408, 858
Eco24I	GRGCYC	2 cut(s)	87, 636
Eco88I	CYCGRG	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	445, 858
EcoT38I	GRGCYC	2 cut(s)	87, 636
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	5 cut(s)	250, 334, 898, 959, 1010
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	246, 330, 894, 955, 1006
FauNDI	CATATG	1 cut(s)	812
Fnu4HI	GCNGC	5 cut(s)	54, 170, 380, 707, 765
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	2 cut(s)	87, 636
Fsp4HI	GCNGC	5 cut(s)	54, 170, 380, 707, 765
FspBI	CTAG	3 cut(s)	657, 729, 744
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	5 cut(s)	54, 170, 380, 707, 765
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	687, 842
HaeIII	GGCC	2 cut(s)	504, 932
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	250, 334, 898, 959, 1010
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	4 cut(s)	36, 62, 98, 831
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	291, 452, 654
Hpy188I	TCNGA	2 cut(s)	724, 794
Hpy188III	TCNNGA	7 cut(s)	331, 407, 416, 629, 895, 923, 1014
Hpy8I	GTNNAC	3 cut(s)	291, 452, 654
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	9 cut(s)	121, 238, 280, 286, 295, 326, 363, 887, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 379
HpyF3I	CTNAG	2 cut(s)	507, 522
Hsp92II	CATG	5 cut(s)	250, 334, 898, 959, 1010
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	724, 891
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	184, 1016
Lsp1109I	GCAGC	3 cut(s)	181, 391, 776
LweI	GCATC	3 cut(s)	211, 418, 508
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	3 cut(s)	657, 729, 744
MaeIII	GTNAC	4 cut(s)	238, 280, 537, 748
MalI	GATC	2 cut(s)	726, 893
MboI	GATC	2 cut(s)	724, 891
MboII	GAAGA	4 cut(s)	57, 395, 794, 875
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	3 cut(s)	87, 205, 636
MlsI	TGGCCA	1 cut(s)	932
MluCI	AATT	7 cut(s)	48, 176, 269, 560, 605, 640, 850
MluNI	TGGCCA	1 cut(s)	932
MmeI	TCCRAC	3 cut(s)	591, 772, 906
MnlI	CCTC	9 cut(s)	117, 129, 550, 845, 859, 866, 891, 978, 1003
Mox20I	TGGCCA	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	963
MscI	TGGCCA	1 cut(s)	932
MseI	TTAA	2 cut(s)	644, 1002
Msp20I	TGGCCA	1 cut(s)	932
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	447, 860
MvaI	CCWGG	2 cut(s)	447, 860
MwoI	GCNNNNNNNGC	2 cut(s)	30, 379
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	2 cut(s)	724, 891
NlaIII	CATG	5 cut(s)	250, 334, 898, 959, 1010
NlaIV	GGNNCC	1 cut(s)	1012
NmuCI	GTSAC	2 cut(s)	238, 280
PaeR7I	CTCGAG	1 cut(s)	629
PagI	TCATGA	2 cut(s)	330, 894
PaqCI	CACCTGC	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	4 cut(s)	36, 62, 98, 831
PflMI	CCANNNNNTGG	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	858
PkrI	GCNGC	5 cut(s)	55, 171, 381, 708, 766
Psp6I	CCWGG	2 cut(s)	445, 858
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	2 cut(s)	445, 858
PspN4I	GGNNCC	1 cut(s)	1012
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	2 cut(s)	381, 766
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	6 cut(s)	323, 365, 451, 530, 661, 824
RsaNI	GTAC	6 cut(s)	322, 364, 450, 529, 660, 823
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	644, 1002
SatI	GCNGC	5 cut(s)	54, 170, 380, 707, 765
Sau3AI	GATC	2 cut(s)	724, 891
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	2 cut(s)	661, 824
ScrFI	CCNGG	2 cut(s)	447, 860
SduI	GDGCHC	3 cut(s)	87, 205, 636
SetI	ASST	8 cut(s)	109, 189, 216, 371, 448, 488, 845, 976
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	211, 418, 508
SfcI	CTRYAG	2 cut(s)	377, 762
Sfr274I	CTCGAG	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	620, 629
SmoI	CTYRAG	2 cut(s)	620, 629
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	7 cut(s)	48, 176, 269, 560, 605, 640, 850
SsiI	CCGC	3 cut(s)	53, 706, 942
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	3 cut(s)	657, 729, 744
StyD4I	CCNGG	2 cut(s)	445, 858
TaaI	ACNGT	9 cut(s)	121, 238, 280, 286, 295, 326, 363, 887, 964
TaqI	TCGA	3 cut(s)	461, 630, 995
TasI	AATT	7 cut(s)	48, 176, 269, 560, 605, 640, 850
TatI	WGTACW	5 cut(s)	321, 363, 528, 659, 822
TauI	GCSGC	2 cut(s)	56, 709
TfiI	GAWTC	4 cut(s)	36, 62, 98, 831
Tru1I	TTAA	2 cut(s)	644, 1002
Tru9I	TTAA	2 cut(s)	644, 1002
TscAI	CASTG	2 cut(s)	124, 291
TseFI	GTSAC	2 cut(s)	238, 280
TseI	GCWGC	3 cut(s)	169, 379, 764
Tsp45I	GTSAC	2 cut(s)	238, 280
TspDTI	ATGAA	5 cut(s)	585, 618, 688, 752, 972
TspRI	CASTG	2 cut(s)	124, 291
Van91I	CCANNNNNTGG	1 cut(s)	214
XapI	RAATTY	2 cut(s)	176, 640
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	3 cut(s)	657, 729, 744
ZrmI	AGTACT	2 cut(s)	661, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.