Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003449

Physical Location & Seq

Genomic Coordinates Reverse (-)

67087602 .. 67091042

Gene Structure 3441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTTGTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCGGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTTTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCTGAAGGGCAAGAGAAAAAGGATGCACCAGATTATGCACCTGGTACACAGAAGATGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGCTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

336

Amino Acids

37.06

Weight (kDa)

5.54

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	85 - 166	6.5e-25	Protein of unknown function (DUF760)
DUF760	PF05542	238 - 321	3.5e-20	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63610 AT1G63610 AT1G63610
fragaria_vesca	FvH4_2g37520 FvH4_2g37520 FvH4_2g37520 FvH4_2g37520
malus_domestica	MD08G1002600.v1.1
prunus_persica	Prupe.1G354700_v2.0.a1 Prupe.1G354700_v2.0.a1
pyrus_communis	pycom08g00220
rosa_chinensis	RchiOBHm_Chr5g0060651 RchiOBHm_Chr6g0270451 RchiOBHm_Chr6g0304221
rosa_laevigata	RLG00000011005 RLG00000013791 RLG00000035377
rosa_multiflora	Rmu_sc0009479.1_g000009 Rmu_sc0023816.1_g000001 Rmu_ssc0000218.1_g000014
rosa_roxburghii	Rroxscaffold_1G00020170 Rroxscaffold_7G00163960 Rroxscaffold_7G00197920
rosa_rugosa	Rorug06G0328800 Rorug06G0328900
rosa_samantha	Rh5CG432600 Rh6AG442700 Rh6BG177300 Rh6BG460000 Rh6CG173100 Rh6CG455100 Rh6DG165500 Rh6DG442100
rosa_wichuraiana	Rw5G037250 Rw6G014760 Rw6G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	3 cut(s)	141, 161, 814
AclWI	GGATC	1 cut(s)	827
AcsI	RAATTY	2 cut(s)	284, 748
AcuI	CTGAAG	2 cut(s)	537, 813
AfaI	GTAC	7 cut(s)	39, 431, 473, 559, 638, 769, 960
AfiI	CCNNNNNNNGG	4 cut(s)	132, 221, 322, 847
AgsI	TTSAA	4 cut(s)	461, 653, 673, 935
AhlI	ACTAGT	1 cut(s)	764
AjnI	CCWGG	2 cut(s)	553, 994
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 945, 977
AluBI	AGCT	3 cut(s)	295, 889, 979
AluI	AGCT	3 cut(s)	295, 889, 979
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	738, 771
AlwI	GGATC	1 cut(s)	827
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	5 cut(s)	138, 277, 487, 824, 889
ApoI	RAATTY	2 cut(s)	284, 748
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	28, 215, 1010
AvaI	CYCGRG	1 cut(s)	737
BanII	GRGCYC	2 cut(s)	195, 744
BbsI	GAAGAC	2 cut(s)	75, 914
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	5 cut(s)	150, 289, 499, 811, 876
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	555, 996
BciVI	GTATCC	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	738, 771
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	3 cut(s)	765, 837, 852
BfmI	CTRYAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	7 cut(s)	139, 162, 278, 488, 815, 825, 890
BlsI	GCNGC	7 cut(s)	140, 163, 279, 489, 816, 826, 891
BmcAI	AGTACT	2 cut(s)	769, 960
Bme1390I	CCNGG	2 cut(s)	555, 996
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	555, 996
BmsI	GCATC	3 cut(s)	319, 526, 616
BpiI	GAAGAC	2 cut(s)	75, 914
BpmI	CTGGAG	2 cut(s)	795, 978
BpuEI	CTTGAG	1 cut(s)	713
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 221, 322, 847
Bse1I	ACTGG	2 cut(s)	451, 503
Bse3DI	GCAATG	2 cut(s)	339, 801
BseBI	CCWGG	2 cut(s)	555, 996
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	4 cut(s)	132, 221, 322, 847
BseMI	GCAATG	2 cut(s)	339, 801
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	451, 503
BseXI	GCAGC	5 cut(s)	150, 289, 499, 811, 876
BseYI	CCCAGC	1 cut(s)	315
BsgI	GTGCAG	2 cut(s)	296, 855
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	4 cut(s)	132, 221, 322, 847
BsmAI	GTCTC	2 cut(s)	738, 771
BsmBI	CGTCTC	1 cut(s)	771
BsnI	GGCC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	195, 313, 744
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	832
BspACI	CCGC	3 cut(s)	141, 161, 814
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	827
BspQI	GCTCTTC	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	339, 801
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	451, 503
BssMI	GATC	1 cut(s)	832
Bst2UI	CCWGG	2 cut(s)	555, 996
Bst4CI	ACNGT	9 cut(s)	16, 106, 229, 346, 388, 394, 403, 434, 471
Bst6I	CTCTTC	1 cut(s)	516
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	2 cut(s)	615, 630
BstF5I	GGATG	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	835
BstMAI	GTCTC	2 cut(s)	738, 771
BstMBI	GATC	1 cut(s)	832
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 898
BstNI	CCWGG	2 cut(s)	555, 996
BstSCI	CCNGG	2 cut(s)	553, 994
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	5 cut(s)	150, 289, 499, 811, 876
BstV2I	GAAGAC	2 cut(s)	75, 914
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	612
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	225, 399
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	981
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	611
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	7 cut(s)	38, 430, 472, 558, 637, 768, 959
CviAII	CATG	2 cut(s)	355, 439
CviQI	GTAC	7 cut(s)	38, 430, 472, 558, 637, 768, 959
DdeI	CTNAG	2 cut(s)	615, 630
DpnI	GATC	1 cut(s)	834
DpnII	GATC	1 cut(s)	832
DraI	TTTAAA	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	195, 744
Eco57I	CTGAAG	2 cut(s)	537, 813
Eco88I	CYCGRG	1 cut(s)	737
EcoRII	CCWGG	2 cut(s)	553, 994
EcoT38I	GRGCYC	2 cut(s)	195, 744
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	2 cut(s)	358, 442
FatI	CATG	2 cut(s)	354, 438
Fnu4HI	GCNGC	7 cut(s)	139, 162, 278, 488, 815, 825, 890
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	2 cut(s)	195, 744
Fsp4HI	GCNGC	7 cut(s)	139, 162, 278, 488, 815, 825, 890
FspBI	CTAG	3 cut(s)	765, 837, 852
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	7 cut(s)	139, 162, 278, 488, 815, 825, 890
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	2 cut(s)	795, 978
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	358, 442
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HinfI	GANTC	4 cut(s)	144, 170, 206, 967
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	28, 215, 1010
Hpy166II	GTNNAC	3 cut(s)	399, 560, 762
Hpy188I	TCNGA	2 cut(s)	832, 914
Hpy188III	TCNNGA	3 cut(s)	439, 515, 737
Hpy8I	GTNNAC	3 cut(s)	399, 560, 762
HpyAV	CCTTC	2 cut(s)	512, 841
HpyCH4III	ACNGT	9 cut(s)	16, 106, 229, 346, 388, 394, 403, 434, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 898
HpyF3I	CTNAG	2 cut(s)	615, 630
Hsp92II	CATG	2 cut(s)	358, 442
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	832
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	5 cut(s)	150, 289, 499, 811, 876
LweI	GCATC	3 cut(s)	319, 526, 616
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	3 cut(s)	765, 837, 852
MaeIII	GTNAC	4 cut(s)	346, 388, 645, 856
MalI	GATC	1 cut(s)	834
MboI	GATC	1 cut(s)	832
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	3 cut(s)	195, 313, 744
MluCI	AATT	7 cut(s)	156, 284, 377, 668, 713, 748, 986
MmeI	TCCRAC	3 cut(s)	459, 699, 892
MnlI	CCTC	6 cut(s)	34, 225, 237, 658, 981, 1002
MseI	TTAA	2 cut(s)	752, 1009
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	555, 996
MvaI	CCWGG	2 cut(s)	555, 996
MwoI	GCNNNNNNNGC	2 cut(s)	138, 898
NdeII	GATC	1 cut(s)	832
NlaIII	CATG	2 cut(s)	358, 442
NmuCI	GTSAC	2 cut(s)	346, 388
PaeR7I	CTCGAG	1 cut(s)	737
PagI	TCATGA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	144, 170, 206, 967
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	7 cut(s)	140, 163, 279, 489, 816, 826, 891
Psp6I	CCWGG	2 cut(s)	553, 994
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	2 cut(s)	553, 994
PspPI	GGNCC	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	7 cut(s)	39, 431, 473, 559, 638, 769, 960
RsaNI	GTAC	7 cut(s)	38, 430, 472, 558, 637, 768, 959
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	752, 1009
SatI	GCNGC	7 cut(s)	139, 162, 278, 488, 815, 825, 890
Sau3AI	GATC	1 cut(s)	832
Sau96I	GGNCC	1 cut(s)	611
ScaI	AGTACT	2 cut(s)	769, 960
ScrFI	CCNGG	2 cut(s)	555, 996
SduI	GDGCHC	3 cut(s)	195, 313, 744
SetI	ASST	9 cut(s)	217, 297, 324, 479, 556, 596, 891, 981, 1000
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	3 cut(s)	319, 526, 616
SfcI	CTRYAG	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	728, 737
SmoI	CTYRAG	2 cut(s)	728, 737
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	7 cut(s)	156, 284, 377, 668, 713, 748, 986
SsiI	CCGC	3 cut(s)	141, 161, 814
SspMI	CTAG	3 cut(s)	765, 837, 852
StyD4I	CCNGG	2 cut(s)	553, 994
TaaI	ACNGT	9 cut(s)	16, 106, 229, 346, 388, 394, 403, 434, 471
TaqI	TCGA	1 cut(s)	738
TasI	AATT	7 cut(s)	156, 284, 377, 668, 713, 748, 986
TatI	WGTACW	5 cut(s)	429, 471, 636, 767, 958
TauI	GCSGC	2 cut(s)	164, 817
TfiI	GAWTC	4 cut(s)	144, 170, 206, 967
Tru1I	TTAA	2 cut(s)	752, 1009
Tru9I	TTAA	2 cut(s)	752, 1009
TscAI	CASTG	2 cut(s)	232, 399
TseFI	GTSAC	2 cut(s)	346, 388
TseI	GCWGC	5 cut(s)	138, 277, 487, 824, 889
Tsp45I	GTSAC	2 cut(s)	346, 388
TspDTI	ATGAA	6 cut(s)	48, 584, 693, 726, 796, 860
TspRI	CASTG	2 cut(s)	232, 399
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	2 cut(s)	284, 748
XhoI	CTCGAG	1 cut(s)	737
XspI	CTAG	3 cut(s)	765, 837, 852
ZrmI	AGTACT	2 cut(s)	769, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.