Rroxscaffold_7G00163960

Protein of unknown function (DUF760)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
6078217 .. 6081302
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163960.1

Sequence Viewer

Length: 1005 bp
ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCTTCTTCTTCATCTGCTTATTCTTGGGTTGGGTCTTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGAGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGTTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTTTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGACGAATGTGTCAGGGGAAGTGATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCGAAGCTTGCAGAATTGCCTCCAGGTGAAAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

37.04

Weight (kDa)

5.6

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 83 - 164 6.4e-25 Protein of unknown function (DUF760)
DUF760 PF05542 236 - 319 4e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
AasI GACNNNNNNGTC 1 cut(s) 568
Acc36I ACCTGC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 2 cut(s) 155, 808
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 2 cut(s) 278, 742
AfaI GTAC 7 cut(s) 39, 425, 467, 553, 632, 763, 954
AfiI CCNNNNNNNGG 3 cut(s) 215, 316, 841
AgsI TTSAA 5 cut(s) 190, 455, 647, 667, 929
AhlI ACTAGT 1 cut(s) 758
AjnI CCWGG 2 cut(s) 547, 988
AjuI GAANNNNNNNTTGG 4 cut(s) 34, 66, 939, 971
AluBI AGCT 3 cut(s) 289, 883, 973
AluI AGCT 3 cut(s) 289, 883, 973
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 732, 765
AlwI GGATC 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 4 cut(s) 132, 271, 481, 883
ApoI RAATTY 2 cut(s) 278, 742
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 605
AsuHPI GGTGA 3 cut(s) 28, 209, 1004
AvaI CYCGRG 1 cut(s) 731
BanII GRGCYC 1 cut(s) 738
BbsI GAAGAC 3 cut(s) 75, 566, 908
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 4 cut(s) 144, 283, 493, 870
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 549, 990
BciVI GTATCC 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 732, 765
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 3 cut(s) 759, 831, 846
BfmI CTRYAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 304
BfuI GTATCC 1 cut(s) 787
BisI GCNGC 6 cut(s) 133, 156, 272, 482, 809, 884
BlsI GCNGC 6 cut(s) 134, 157, 273, 483, 810, 885
BmcAI AGTACT 2 cut(s) 763, 954
Bme1390I CCNGG 2 cut(s) 549, 990
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 605
BmrFI CCNGG 2 cut(s) 549, 990
BmsI GCATC 3 cut(s) 313, 520, 610
BpiI GAAGAC 3 cut(s) 75, 566, 908
BpmI CTGGAG 2 cut(s) 789, 972
BpuEI CTTGAG 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 316, 841
Bse1I ACTGG 2 cut(s) 445, 497
Bse3DI GCAATG 2 cut(s) 333, 795
BseBI CCWGG 2 cut(s) 549, 990
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 3 cut(s) 215, 316, 841
BseMI GCAATG 2 cut(s) 333, 795
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 2 cut(s) 445, 497
BseXI GCAGC 4 cut(s) 144, 283, 493, 870
BseYI CCCAGC 1 cut(s) 309
BsgI GTGCAG 2 cut(s) 290, 849
BshFI GGCC 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 215, 316, 841
BsmAI GTCTC 2 cut(s) 732, 765
BsmBI CGTCTC 1 cut(s) 765
BsnI GGCC 1 cut(s) 606
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 2 cut(s) 307, 738
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 1 cut(s) 826
BspACI CCGC 2 cut(s) 155, 808
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 1 cut(s) 821
BspQI GCTCTTC 1 cut(s) 510
BsrDI GCAATG 2 cut(s) 333, 795
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 2 cut(s) 445, 497
BssMI GATC 1 cut(s) 826
Bst2UI CCWGG 2 cut(s) 549, 990
Bst4CI ACNGT 9 cut(s) 16, 100, 223, 340, 382, 388, 397, 428, 465
Bst6I CTCTTC 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 2 cut(s) 609, 624
BstF5I GGATG 1 cut(s) 535
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 829
BstMAI GTCTC 2 cut(s) 732, 765
BstMBI GATC 1 cut(s) 826
BstMWI GCNNNNNNNGC 2 cut(s) 132, 892
BstNI CCWGG 2 cut(s) 549, 990
BstSCI CCNGG 2 cut(s) 547, 988
BstSFI CTRYAG 1 cut(s) 479
BstV1I GCAGC 4 cut(s) 144, 283, 493, 870
BstV2I GAAGAC 3 cut(s) 75, 566, 908
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 1 cut(s) 606
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 219, 393
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 975
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 605
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 7 cut(s) 38, 424, 466, 552, 631, 762, 953
CviAII CATG 2 cut(s) 349, 433
CviQI GTAC 7 cut(s) 38, 424, 466, 552, 631, 762, 953
DdeI CTNAG 2 cut(s) 609, 624
DpnI GATC 1 cut(s) 828
DpnII GATC 1 cut(s) 826
DraI TTTAAA 1 cut(s) 747
DrdI GACNNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 547, 988
EcoT38I GRGCYC 1 cut(s) 738
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 2 cut(s) 352, 436
FatI CATG 2 cut(s) 348, 432
Fnu4HI GCNGC 6 cut(s) 133, 156, 272, 482, 809, 884
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 6 cut(s) 133, 156, 272, 482, 809, 884
FspBI CTAG 3 cut(s) 759, 831, 846
GlaI GCGC 1 cut(s) 332
GluI GCNGC 6 cut(s) 133, 156, 272, 482, 809, 884
GsaI CCCAGC 1 cut(s) 313
GsuI CTGGAG 2 cut(s) 789, 972
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 195
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 352, 436
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 4 cut(s) 138, 164, 200, 961
HpaII CCGG 1 cut(s) 195
HphI GGTGA 3 cut(s) 28, 209, 1004
Hpy166II GTNNAC 3 cut(s) 393, 554, 756
Hpy188I TCNGA 3 cut(s) 826, 908, 969
Hpy188III TCNNGA 3 cut(s) 433, 509, 731
Hpy8I GTNNAC 3 cut(s) 393, 554, 756
HpyAV CCTTC 2 cut(s) 506, 835
HpyCH4III ACNGT 9 cut(s) 16, 100, 223, 340, 382, 388, 397, 428, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 892
HpyF3I CTNAG 2 cut(s) 609, 624
Hsp92II CATG 2 cut(s) 352, 436
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 826
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 4 cut(s) 144, 283, 493, 870
LweI GCATC 3 cut(s) 313, 520, 610
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 3 cut(s) 759, 831, 846
MaeIII GTNAC 4 cut(s) 340, 382, 639, 850
MalI GATC 1 cut(s) 828
MboI GATC 1 cut(s) 826
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 307, 738
MluCI AATT 7 cut(s) 150, 278, 371, 662, 707, 742, 980
MmeI TCCRAC 3 cut(s) 453, 693, 886
MnlI CCTC 7 cut(s) 34, 122, 219, 231, 652, 975, 996
MseI TTAA 2 cut(s) 746, 1003
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 549, 990
MvaI CCWGG 2 cut(s) 549, 990
MwoI GCNNNNNNNGC 2 cut(s) 132, 892
NdeII GATC 1 cut(s) 826
NlaIII CATG 2 cut(s) 352, 436
NmuCI GTSAC 2 cut(s) 340, 382
PaeR7I CTCGAG 1 cut(s) 731
PagI TCATGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 510
PfeI GAWTC 4 cut(s) 138, 164, 200, 961
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 6 cut(s) 134, 157, 273, 483, 810, 885
Psp6I CCWGG 2 cut(s) 547, 988
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 2 cut(s) 547, 988
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 7 cut(s) 39, 425, 467, 553, 632, 763, 954
RsaNI GTAC 7 cut(s) 38, 424, 466, 552, 631, 762, 953
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 746, 1003
SatI GCNGC 6 cut(s) 133, 156, 272, 482, 809, 884
Sau3AI GATC 1 cut(s) 826
Sau96I GGNCC 1 cut(s) 605
ScaI AGTACT 2 cut(s) 763, 954
ScrFI CCNGG 2 cut(s) 549, 990
SduI GDGCHC 2 cut(s) 307, 738
SetI ASST 9 cut(s) 211, 291, 318, 473, 550, 590, 885, 975, 994
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 3 cut(s) 313, 520, 610
SfcI CTRYAG 1 cut(s) 479
Sfr274I CTCGAG 1 cut(s) 731
SlaI CTCGAG 1 cut(s) 731
SmlI CTYRAG 2 cut(s) 722, 731
SmoI CTYRAG 2 cut(s) 722, 731
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 7 cut(s) 150, 278, 371, 662, 707, 742, 980
SsiI CCGC 2 cut(s) 155, 808
SspMI CTAG 3 cut(s) 759, 831, 846
StyD4I CCNGG 2 cut(s) 547, 988
TaaI ACNGT 9 cut(s) 16, 100, 223, 340, 382, 388, 397, 428, 465
TaqI TCGA 1 cut(s) 732
TasI AATT 7 cut(s) 150, 278, 371, 662, 707, 742, 980
TatI WGTACW 5 cut(s) 423, 465, 630, 761, 952
TauI GCSGC 2 cut(s) 158, 811
TfiI GAWTC 4 cut(s) 138, 164, 200, 961
Tru1I TTAA 2 cut(s) 746, 1003
Tru9I TTAA 2 cut(s) 746, 1003
TscAI CASTG 2 cut(s) 226, 393
TseFI GTSAC 2 cut(s) 340, 382
TseI GCWGC 4 cut(s) 132, 271, 481, 883
Tsp45I GTSAC 2 cut(s) 340, 382
TspDTI ATGAA 5 cut(s) 48, 687, 720, 790, 854
TspRI CASTG 2 cut(s) 226, 393
Van91I CCANNNNNTGG 1 cut(s) 316
XapI RAATTY 2 cut(s) 278, 742
XhoI CTCGAG 1 cut(s) 731
XspI CTAG 3 cut(s) 759, 831, 846
ZrmI AGTACT 2 cut(s) 763, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.