Rh6DG165500

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003449
Physical Location & Seq
Reverse (-)
25330535 .. 25334013
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG165500.1

Sequence Viewer

Length: 828 bp
ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCTTCTTCTTCTTCTTCTTCATCTGCTCATTCTTGGGTTGGGTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAAGGATATACTATTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGCTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAACATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCCGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCAAGCCCCAAAATTTAAAGGTAAACACCTTCCCTTTTGTTCATGTGAATTGCCTTTTATGTTGTCTAGATTTTAGGTTCATGGCTAGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

275

Amino Acids

30.65

Weight (kDa)

8.82

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 84 - 165 4.1e-25 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 319
AciI CCGC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 281, 745
AfaI GTAC 5 cut(s) 39, 428, 470, 556, 635
AfiI CCNNNNNNNGG 3 cut(s) 129, 218, 319
AgsI TTSAA 3 cut(s) 458, 650, 670
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 735
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 4 cut(s) 135, 274, 292, 484
ApoI RAATTY 2 cut(s) 281, 745
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 28, 212
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 147, 279, 286, 496
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 2 cut(s) 800, 819
BfmI CTRYAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 5 cut(s) 136, 159, 275, 293, 485
BlsI GCNGC 5 cut(s) 137, 160, 276, 294, 486
Bme1390I CCNGG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 608
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 3 cut(s) 316, 523, 613
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 710, 719
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 218, 319
Bse1I ACTGG 2 cut(s) 448, 500
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 3 cut(s) 129, 218, 319
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 2 cut(s) 448, 500
BseXI GCAGC 4 cut(s) 147, 279, 286, 496
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 129, 218, 319
BsmAI GTCTC 1 cut(s) 735
BsnI GGCC 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 192, 310
Bsp1407I TGTACA 1 cut(s) 426
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 307
BspQI GCTCTTC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 2 cut(s) 448, 500
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 9 cut(s) 16, 103, 226, 343, 385, 391, 400, 431, 468
Bst6I CTCTTC 1 cut(s) 513
BstAUI TGTACA 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 612, 627
BstF5I GGATG 1 cut(s) 538
BstHHI GCGC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 735
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 482
BstV1I GCAGC 4 cut(s) 147, 279, 286, 496
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 609
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 222, 396
BveI ACCTGC 1 cut(s) 307
CciI TCATGA 1 cut(s) 435
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 608
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 5 cut(s) 38, 427, 469, 555, 634
CviAII CATG 4 cut(s) 352, 436, 776, 814
CviJI RGCY 9 cut(s) 22, 161, 190, 277, 292, 499, 609, 739, 818
CviKI_1 RGCY 9 cut(s) 22, 161, 190, 277, 292, 499, 609, 739, 818
CviQI GTAC 5 cut(s) 38, 427, 469, 555, 634
DdeI CTNAG 2 cut(s) 612, 627
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 4 cut(s) 355, 439, 779, 817
FatI CATG 4 cut(s) 351, 435, 775, 813
Fnu4HI GCNGC 5 cut(s) 136, 159, 275, 293, 485
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 5 cut(s) 136, 159, 275, 293, 485
FspBI CTAG 2 cut(s) 800, 819
GlaI GCGC 1 cut(s) 335
GluI GCNGC 5 cut(s) 136, 159, 275, 293, 485
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 1 cut(s) 609
HapII CCGG 1 cut(s) 198
HhaI GCGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 355, 439, 779, 817
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 3 cut(s) 141, 167, 203
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 28, 212
Hpy166II GTNNAC 3 cut(s) 396, 557, 757
Hpy188III TCNNGA 3 cut(s) 436, 512, 800
Hpy8I GTNNAC 3 cut(s) 396, 557, 757
HpyAV CCTTC 3 cut(s) 235, 509, 772
HpyCH4III ACNGT 9 cut(s) 16, 103, 226, 343, 385, 391, 400, 431, 468
HpyCH4V TGCA 8 cut(s) 274, 329, 416, 464, 484, 536, 548, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 612, 627
Hsp92II CATG 4 cut(s) 355, 439, 779, 817
HspAI GCGC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 4 cut(s) 147, 279, 286, 496
LweI GCATC 3 cut(s) 316, 523, 613
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 2 cut(s) 800, 819
MaeIII GTNAC 3 cut(s) 343, 385, 642
MhlI GDGCHC 2 cut(s) 192, 310
MluCI AATT 7 cut(s) 153, 281, 374, 665, 710, 745, 781
MmeI TCCRAC 2 cut(s) 456, 696
MnlI CCTC 3 cut(s) 34, 222, 655
MseI TTAA 1 cut(s) 749
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 552
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 135
NlaIII CATG 4 cut(s) 355, 439, 779, 817
NmuCI GTSAC 2 cut(s) 343, 385
PagI TCATGA 1 cut(s) 435
PaqCI CACCTGC 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 141, 167, 203
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 5 cut(s) 137, 160, 276, 294, 486
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 608
PstI CTGCAG 1 cut(s) 486
RsaI GTAC 5 cut(s) 39, 428, 470, 556, 635
RsaNI GTAC 5 cut(s) 38, 427, 469, 555, 634
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 1 cut(s) 749
SatI GCNGC 5 cut(s) 136, 159, 275, 293, 485
Sau96I GGNCC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 2 cut(s) 192, 310
SetI ASST 9 cut(s) 214, 294, 321, 476, 553, 593, 756, 764, 812
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 3 cut(s) 316, 523, 613
SfcI CTRYAG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 725, 734
SmoI CTYRAG 2 cut(s) 725, 734
Sse9I AATT 7 cut(s) 153, 281, 374, 665, 710, 745, 781
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 800, 819
StyD4I CCNGG 1 cut(s) 550
TaaI ACNGT 9 cut(s) 16, 103, 226, 343, 385, 391, 400, 431, 468
TaqI TCGA 1 cut(s) 566
TasI AATT 7 cut(s) 153, 281, 374, 665, 710, 745, 781
TatI WGTACW 3 cut(s) 426, 468, 633
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 3 cut(s) 141, 167, 203
Tru1I TTAA 1 cut(s) 749
Tru9I TTAA 1 cut(s) 749
TscAI CASTG 2 cut(s) 229, 396
TseFI GTSAC 2 cut(s) 343, 385
TseI GCWGC 4 cut(s) 135, 274, 292, 484
Tsp45I GTSAC 2 cut(s) 343, 385
TspDTI ATGAA 5 cut(s) 54, 690, 723, 764, 802
TspRI CASTG 2 cut(s) 229, 396
Van91I CCANNNNNTGG 1 cut(s) 319
XapI RAATTY 2 cut(s) 281, 745
XbaI TCTAGA 1 cut(s) 799
XspI CTAG 2 cut(s) 800, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.