FvH4_2g39720
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
28445198 .. 28450458
5261 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39720.t2

Sequence Viewer

Length: 1461 bp
ATGAGTTTCAGGGATGACAATGAAGAAGGGAGGGATGTCAGGAAGCCTTTCCTTCATACTGGGAGCTGGTACCGTATGGGTTCCCGCCAGTCCAGTATGATGGGCTCCTCTCAGGTCATGAGGGATAGCTCCGTTTCTGTTGTGGCTTGTGTTCTCATCGTCGCTTTGGGTCCTATCCAATTCGGCTTCACTTCTGGGTATTCTTCTCCGACGCAATCAGCCATCACTGCTGATCTTGGACTGTCAGTGTCAGAGTATTCGCTGTTTGGTTCTTTATCAAATGTGGGTGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCGCGATTCCTAATGTCATCGGCTGGCTTGCCATATCATTTGCCAAAGATTCGTCATTTCTCTACATGGGAAGGTTGTTGGAAGGATTTGGCGTGGGAATAATCTCGTATGTGGTGCCCGTATATATTGCAGAGATAGCGCCTCAAAATTTGAGAGGCGCTTTGGGTGCAGTCAATCAGCTCTCTGTAACTATTGGGATACTGCTGGCTTATTTGCTTGGACTTTTTGTTGAATGGAGATATCTTGCAGTTTTGGGAATATTGCCTTGTACGATATTGATACCTGGGCTGTTTTTCATTCCTGAATCACCTCGATGGCTGGCAAAAATGGGTATGACAGAGGATTTTGAAGCCTCTTTGCAAGTTCTACGAGGATTTGATACTGATATTTCCATTGAAGTGAATGAGATAAAGAGATCTGTGGCATCAACAACCAGAAGAACAACAATAAGGTTTGCAGAACTCAAACAAAGAAGATACTGGCTTCCTTTAATGATTGGAATTGGACTGCTTGTTCTTCAACAGCTTAGTGGAATTAATGGCGTTCTATTCTATTCCAGTACCATCTTTGAAACTGCTGGGATTACATCAAGTAATGCTGCCACATGTGGCCTTGGTGCTGTTCAGGTAATAGCAACTGGTGTGACTACCTGGTTGGTGGACAGAGCAGGCCGTCGACTTCTGCTTATTATCTCCTCTGCTGGAATGACAATTAGCCTCCTAGTTGTTTCTGTAGCATTCTATCTGAAGGAATATGCAGCGGTTGATTCAGGTTTCTATAGTGTGTTGAGCATCATTTCAGTGGTTGGAGTAGTGGCCATGGTAATTGCCTTCTCTCTGGGTGTAGGAGCTATTCCATGGATCATAATGTCTGAGATTCTTCCAATTAATATTAAAGGCCTTGCTGGAAGTATAGCAACACTTGCCAATTGGTTTGTAGCCTGGGTGGTCACTATGACTGCAAACTTGCTACTGGAATGGAACAGTGGAGGAACCTTCACCATTTATATGGTTGTGAGTGCTTTTACTGTTGTATTTGTTACCATTTGGGTCCCCGAGACAAAGGGCAGAACTCTGGAAGAGATTCAGTGGTCCTTCAGATGA

Protein Analysis

487

Amino Acids

52.57

Weight (kDa)

7.63

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 51 - 390 2.7e-73 Sugar (and other) transporter
MFS_1 PF07690 61 - 384 5.4e-23 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 3 cut(s) 69, 287, 472
AccI GTMKAC 1 cut(s) 1033
AccII CGCG 1 cut(s) 362
AciI CCGC 3 cut(s) 85, 360, 1118
AclWI GGATC 1 cut(s) 1226
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 2 cut(s) 1124, 1438
AfaI GTAC 3 cut(s) 71, 628, 919
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 962
AgsI TTSAA 5 cut(s) 590, 707, 755, 878, 929
AjnI CCWGG 3 cut(s) 640, 1007, 1298
AloI GAACNNNNNNTCC 2 cut(s) 855, 887
AluBI AGCT 5 cut(s) 66, 129, 538, 883, 1208
AluI AGCT 5 cut(s) 66, 129, 538, 883, 1208
Alw26I GTCTC 1 cut(s) 1409
AlwI GGATC 1 cut(s) 1226
Ama87I CYCGRG 1 cut(s) 1412
AoxI GGCC 4 cut(s) 967, 1027, 1173, 1255
ApeKI GCWGC 2 cut(s) 956, 1115
ApoI RAATTY 1 cut(s) 505
AseI ATTAAT 2 cut(s) 894, 1245
Asp700I GAANNNNTTC 2 cut(s) 47, 1440
Asp718I GGTACC 1 cut(s) 69
AspLEI GCGC 3 cut(s) 339, 499, 518
AspS9I GGNCC 3 cut(s) 170, 1408, 1449
AsuHPI GGTGA 2 cut(s) 657, 1348
AvaI CYCGRG 1 cut(s) 1412
AvaII GGWCC 3 cut(s) 170, 1408, 1449
BaeGI GKGCMC 1 cut(s) 477
BalI TGGCCA 1 cut(s) 1175
BanI GGYRCC 3 cut(s) 69, 287, 472
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 943, 1127
BccI CCATC 4 cut(s) 94, 230, 666, 929
BceAI ACGGC 1 cut(s) 1014
BciT130I CCWGG 3 cut(s) 642, 1009, 1300
BciVI GTATCC 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 1409
BfaI CTAG 1 cut(s) 1079
BfmI CTRYAG 3 cut(s) 303, 1089, 1135
BfoI RGCGCY 2 cut(s) 500, 519
BfuI GTATCC 1 cut(s) 549
BglII AGATCT 1 cut(s) 773
BisI GCNGC 3 cut(s) 360, 957, 1116
BlsI GCNGC 3 cut(s) 361, 958, 1117
Bme1390I CCNGG 3 cut(s) 642, 1009, 1300
Bme18I GGWCC 3 cut(s) 170, 1408, 1449
BmeT110I CYCGRG 1 cut(s) 1412
BmgT120I GGNCC 3 cut(s) 170, 1408, 1449
BmiI GGNNCC 9 cut(s) 71, 82, 106, 171, 289, 474, 1351, 1409, 1410
BmrFI CCNGG 3 cut(s) 642, 1009, 1300
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 791, 1158
BmuI ACTGGG 1 cut(s) 69
BsaJI CCNNGG 6 cut(s) 291, 641, 970, 1176, 1214, 1299
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 8 cut(s) 64, 88, 93, 309, 842, 915, 1000, 1335
BseBI CCWGG 3 cut(s) 642, 1009, 1300
BseDI CCNNGG 6 cut(s) 291, 641, 970, 1176, 1214, 1299
BseGI GGATG 2 cut(s) 19, 40
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 125, 315, 1221
BseNI ACTGG 8 cut(s) 64, 88, 93, 309, 842, 915, 1000, 1335
BseRI GAGGAG 2 cut(s) 97, 1042
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 2 cut(s) 943, 1127
BseYI CCCAGC 1 cut(s) 935
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 4 cut(s) 969, 1029, 1175, 1257
BshNI GGYRCC 3 cut(s) 69, 287, 472
BsiHKCI CYCGRG 1 cut(s) 1412
BslFI GGGAC 1 cut(s) 1394
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 1409
BsmFI GGGAC 1 cut(s) 1394
BsmI GAATGC 1 cut(s) 1094
BsnI GGCC 4 cut(s) 969, 1029, 1175, 1257
BsoBI CYCGRG 1 cut(s) 1412
Bsp1286I GDGCHC 2 cut(s) 107, 477
Bsp143I GATC 4 cut(s) 232, 354, 773, 1218
Bsp19I CCATGG 3 cut(s) 291, 1176, 1214
BspACI CCGC 3 cut(s) 85, 360, 1118
BspANI GGCC 4 cut(s) 969, 1029, 1175, 1257
BspCNI CTCAG 3 cut(s) 124, 316, 1222
BspFNI CGCG 1 cut(s) 362
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 9 cut(s) 71, 82, 106, 171, 289, 474, 1351, 1409, 1410
BspPI GGATC 1 cut(s) 1226
BspT107I GGYRCC 3 cut(s) 69, 287, 472
BsrI ACTGG 8 cut(s) 64, 88, 93, 309, 842, 915, 1000, 1335
BssECI CCNNGG 6 cut(s) 291, 641, 970, 1176, 1214, 1299
BssMI GATC 4 cut(s) 232, 354, 773, 1218
BssT1I CCWWGG 4 cut(s) 291, 970, 1176, 1214
Bst2UI CCWGG 3 cut(s) 642, 1009, 1300
Bst4CI ACNGT 4 cut(s) 74, 243, 1343, 1387
Bst6I CTCTTC 1 cut(s) 1431
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstC8I GCNNGC 5 cut(s) 383, 387, 564, 678, 1027
BstDEI CTNAG 4 cut(s) 111, 324, 884, 1230
BstDSI CCRYGG 3 cut(s) 291, 1176, 1214
BstF5I GGATG 2 cut(s) 19, 40
BstFNI CGCG 1 cut(s) 362
BstH2I RGCGCY 2 cut(s) 500, 519
BstHHI GCGC 3 cut(s) 339, 499, 518
BstKTI GATC 4 cut(s) 235, 357, 776, 1221
BstMAI GTCTC 1 cut(s) 1409
BstMBI GATC 4 cut(s) 232, 354, 773, 1218
BstMWI GCNNNNNNNGC 4 cut(s) 227, 494, 524, 1280
BstNI CCWGG 3 cut(s) 642, 1009, 1300
BstNSI RCATGY 1 cut(s) 966
BstSCI CCNGG 3 cut(s) 640, 1007, 1298
BstSFI CTRYAG 3 cut(s) 303, 1089, 1135
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 943, 1127
BstX2I RGATCY 1 cut(s) 773
BstXI CCANNNNNNTGG 2 cut(s) 100, 1366
BstYI RGATCY 1 cut(s) 773
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 4 cut(s) 969, 1029, 1175, 1257
BtgI CCRYGG 3 cut(s) 291, 1176, 1214
BtsCI GGATG 2 cut(s) 19, 40
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 6 cut(s) 225, 252, 316, 1164, 1348, 1451
Cac8I GCNNGC 5 cut(s) 383, 387, 564, 678, 1027
CciI TCATGA 1 cut(s) 117
CfoI GCGC 3 cut(s) 339, 499, 518
Cfr13I GGNCC 3 cut(s) 170, 1408, 1449
CseI GACGC 1 cut(s) 220
CsiI ACCWGGT 1 cut(s) 1007
Csp6I GTAC 3 cut(s) 70, 627, 918
CviAII CATG 6 cut(s) 118, 292, 424, 963, 1177, 1215
CviQI GTAC 3 cut(s) 70, 627, 918
DdeI CTNAG 4 cut(s) 111, 324, 884, 1230
DpnI GATC 4 cut(s) 234, 356, 775, 1220
DpnII GATC 4 cut(s) 232, 354, 773, 1218
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 1431
EarI CTCTTC 1 cut(s) 1431
Eco130I CCWWGG 4 cut(s) 291, 970, 1176, 1214
Eco147I AGGCCT 1 cut(s) 1257
Eco24I GRGCYC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 599
Eco47I GGWCC 3 cut(s) 170, 1408, 1449
Eco57I CTGAAG 2 cut(s) 1124, 1438
Eco88I CYCGRG 1 cut(s) 1412
EcoO109I RGGNCCY 2 cut(s) 170, 1408
EcoRII CCWGG 3 cut(s) 640, 1007, 1298
EcoRV GATATC 1 cut(s) 599
EcoT14I CCWWGG 4 cut(s) 291, 970, 1176, 1214
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 4 cut(s) 291, 970, 1176, 1214
FaeI CATG 6 cut(s) 121, 295, 427, 966, 1180, 1218
FaqI GGGAC 1 cut(s) 1394
FatI CATG 6 cut(s) 117, 291, 423, 962, 1176, 1214
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 1033
Fnu4HI GCNGC 3 cut(s) 360, 957, 1116
FokI GGATG 2 cut(s) 26, 47
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 3 cut(s) 360, 957, 1116
FspBI CTAG 1 cut(s) 1079
GlaI GCGC 3 cut(s) 338, 498, 517
GluI GCNGC 3 cut(s) 360, 957, 1116
GsaI CCCAGC 1 cut(s) 939
HaeII RGCGCY 2 cut(s) 500, 519
HaeIII GGCC 4 cut(s) 969, 1029, 1175, 1257
HgaI GACGC 1 cut(s) 220
HhaI GCGC 3 cut(s) 339, 499, 518
Hin1II CATG 6 cut(s) 121, 295, 427, 966, 1180, 1218
Hin6I GCGC 3 cut(s) 337, 497, 516
HinP1I GCGC 3 cut(s) 337, 497, 516
HincII GTYRAC 1 cut(s) 1034
HindII GTYRAC 1 cut(s) 1034
HinfI GANTC 6 cut(s) 364, 407, 662, 1124, 1234, 1441
HphI GGTGA 2 cut(s) 657, 1348
Hpy166II GTNNAC 2 cut(s) 1018, 1034
Hpy188I TCNGA 7 cut(s) 210, 253, 318, 325, 1104, 1231, 1457
Hpy188III TCNNGA 4 cut(s) 40, 118, 659, 1433
Hpy8I GTNNAC 2 cut(s) 1018, 1034
Hpy99I CGWCG 3 cut(s) 164, 214, 1035
HpyAV CCTTC 7 cut(s) 20, 62, 423, 434, 1099, 1198, 1363
HpyCH4III ACNGT 4 cut(s) 74, 243, 1343, 1387
HpyCH4V TGCA 7 cut(s) 488, 527, 605, 718, 815, 1115, 1319
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 494, 524, 1280
HpyF3I CTNAG 4 cut(s) 111, 324, 884, 1230
Hsp92II CATG 6 cut(s) 121, 295, 427, 966, 1180, 1218
HspAI GCGC 3 cut(s) 337, 497, 516
KflI GGGWCCC 1 cut(s) 1408
KpnI GGTACC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 232, 354, 773, 1218
LmnI GCTCC 4 cut(s) 63, 110, 134, 1205
Lsp1109I GCAGC 2 cut(s) 943, 1127
LweI GCATC 2 cut(s) 791, 1158
MabI ACCWGGT 1 cut(s) 1007
MaeI CTAG 1 cut(s) 1079
MaeIII GTNAC 4 cut(s) 544, 1000, 1306, 1396
MalI GATC 4 cut(s) 234, 356, 775, 1220
MboI GATC 4 cut(s) 232, 354, 773, 1218
MboII GAAGA 7 cut(s) 35, 195, 807, 843, 866, 1229, 1448
MfeI CAATTG 1 cut(s) 1285
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 2 cut(s) 107, 477
MlsI TGGCCA 1 cut(s) 1175
MluCI AATT 8 cut(s) 179, 505, 858, 891, 1068, 1182, 1242, 1285
MluNI TGGCCA 1 cut(s) 1175
MmeI TCCRAC 3 cut(s) 233, 417, 1144
Mox20I TGGCCA 1 cut(s) 1175
MroXI GAANNNNTTC 2 cut(s) 47, 1440
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 5 cut(s) 350, 848, 894, 1245, 1251
MslI CAYNNNNRTG 4 cut(s) 670, 755, 1157, 1364
Msp20I TGGCCA 1 cut(s) 1175
MspA1I CMGCKG 1 cut(s) 1118
MspR9I CCNGG 3 cut(s) 642, 1009, 1300
MunI CAATTG 1 cut(s) 1285
Mva1269I GAATGC 1 cut(s) 1094
MvaI CCWGG 3 cut(s) 642, 1009, 1300
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 227, 494, 524, 1280
NcoI CCATGG 3 cut(s) 291, 1176, 1214
NdeII GATC 4 cut(s) 232, 354, 773, 1218
NlaIII CATG 6 cut(s) 121, 295, 427, 966, 1180, 1218
NlaIV GGNNCC 9 cut(s) 71, 82, 106, 171, 289, 474, 1351, 1409, 1410
NmuCI GTSAC 2 cut(s) 1000, 1306
NspI RCATGY 1 cut(s) 966
PagI TCATGA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 1257
PciI ACATGT 1 cut(s) 962
PctI GAATGC 1 cut(s) 1094
PdmI GAANNNNTTC 2 cut(s) 47, 1440
PfeI GAWTC 6 cut(s) 364, 407, 662, 1124, 1234, 1441
PkrI GCNGC 3 cut(s) 361, 958, 1117
PpuMI RGGWCCY 2 cut(s) 170, 1408
PscI ACATGT 1 cut(s) 962
PshBI ATTAAT 2 cut(s) 894, 1245
Psp5II RGGWCCY 2 cut(s) 170, 1408
Psp6I CCWGG 3 cut(s) 640, 1007, 1298
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 3 cut(s) 640, 1007, 1298
PspN4I GGNNCC 9 cut(s) 71, 82, 106, 171, 289, 474, 1351, 1409, 1410
PspPI GGNCC 3 cut(s) 170, 1408, 1449
PspPPI RGGWCCY 2 cut(s) 170, 1408
PsuI RGATCY 1 cut(s) 773
RsaI GTAC 3 cut(s) 71, 628, 919
RsaNI GTAC 3 cut(s) 70, 627, 918
RseI CAYNNNNRTG 4 cut(s) 670, 755, 1157, 1364
SalI GTCGAC 1 cut(s) 1032
SaqAI TTAA 5 cut(s) 350, 848, 894, 1245, 1251
SatI GCNGC 3 cut(s) 360, 957, 1116
Sau3AI GATC 4 cut(s) 232, 354, 773, 1218
Sau96I GGNCC 3 cut(s) 170, 1408, 1449
ScrFI CCNGG 3 cut(s) 642, 1009, 1300
SduI GDGCHC 2 cut(s) 107, 477
SexAI ACCWGGT 1 cut(s) 1007
SfaNI GCATC 2 cut(s) 791, 1158
SfcI CTRYAG 3 cut(s) 303, 1089, 1135
SinI GGWCC 3 cut(s) 170, 1408, 1449
SmiMI CAYNNNNRTG 4 cut(s) 670, 755, 1157, 1364
Sse9I AATT 8 cut(s) 179, 505, 858, 891, 1068, 1182, 1242, 1285
SseBI AGGCCT 1 cut(s) 1257
SsiI CCGC 3 cut(s) 85, 360, 1118
SspI AATATT 2 cut(s) 618, 1249
SspMI CTAG 1 cut(s) 1079
StuI AGGCCT 1 cut(s) 1257
StyD4I CCNGG 3 cut(s) 640, 1007, 1298
StyI CCWWGG 4 cut(s) 291, 970, 1176, 1214
TaaI ACNGT 4 cut(s) 74, 243, 1343, 1387
TaqI TCGA 2 cut(s) 670, 1033
TasI AATT 8 cut(s) 179, 505, 858, 891, 1068, 1182, 1242, 1285
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 6 cut(s) 364, 407, 662, 1124, 1234, 1441
Tru1I TTAA 5 cut(s) 350, 848, 894, 1245, 1251
Tru9I TTAA 5 cut(s) 350, 848, 894, 1245, 1251
TscAI CASTG 6 cut(s) 232, 252, 316, 1164, 1348, 1451
TseFI GTSAC 2 cut(s) 1000, 1306
TseI GCWGC 2 cut(s) 956, 1115
Tsp45I GTSAC 2 cut(s) 1000, 1306
TspDTI ATGAA 3 cut(s) 36, 44, 643
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 6 cut(s) 232, 252, 316, 1164, 1348, 1451
VpaK11BI GGWCC 3 cut(s) 170, 1408, 1449
VspI ATTAAT 2 cut(s) 894, 1245
XapI RAATTY 1 cut(s) 505
XceI RCATGY 1 cut(s) 966
XmiI GTMKAC 1 cut(s) 1033
XmnI GAANNNNTTC 2 cut(s) 47, 1440
XspI CTAG 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.