Rmu_sc0000163.1_g000001
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000163.1
Physical Location & Seq
Reverse (-)
1779 .. 5896
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000163.1_g000001.1.cds

Sequence Viewer

Length: 1464 bp
atgagtttcagggaggacagtggtgaagaagggagggatctcaggaagccgttcctgcatactgggagctggtaccgtatgggttccaggcaatccagtatgatgggttcgtctcaggtcatgagggatagctccatttctgtagtggcttgtgttctgattgtggccttgggtcctatccaattcggcttcacttctgggtattcttctccgactcaagcagcaatcaccgctgatcttggactctcagtgtcagagtattctctttttggttctttatcaaatgtgggcgccatggtgggggctatagccagtggtcagatttctgagtatattgggcgcaaagggtctttaatgatcgccgccattcctaatgtcatcggctggcttgccatatcatttgccaaagattcttcatttctctacatgggaaggttgttggaagggtttggcgtgggaataatctcgtatgtggtgcctgtatatattgcagagatagcgcctcaaaatttgagaggcgctttgggttcagtcaatcagctctccgtaaccattgggataatgctggcttatgtgcttggactttttgttcaatggagatatcttgcagttttgggaatattgccttgtacgatattgatacctgggctgtttttcattccagaatcacctcgatggctggcaaaaatgggtatgacagacgattttgaagcctctttgcaagttctacggggatttgatactgatatttccgttgaagtgaatgagataaagaggtctgtggcatcaacaaccagaagaacaacaataaggtttgcagaactcaaacaaagaagatactggcttcctttaatgattggaattggattacttgttcttcaacagcttagtggaattaacggcgttctattctattccagtaccatctttgaaactgctgggattacatcaagtaatgcagccacatgtggccttggtgctgttcaggtcatagcaactggtgtgactacctggttggtggacagagcaggccgtcgacttctgcttattatctcctccgctggaatgacagttagcctcctagttgttgctgtagcattttatctaaaggattatgcagtggttgattcaggtttttatagcgtgttgagcatcatttcagtggttggagttgtggccatggtaattgccttctctctgggtgtaggagctattccatggatcataatgtctgagattcttccggttaatattaaaggccttgctggaagtatagcgacacttgccaattggtttacagcctgggtgatcaccatgactgcaaacttgctactggaatggaacagtggaggaacattcaccatttacatggttgtgagtgctttcactgtagtgttcgttaccatttgggttcccgagacaaaaggcagaactctggaagagattcagtggtccttcagatga

Protein Analysis

487

Amino Acids

52.6

Weight (kDa)

8.34

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 3 cut(s) 72, 290, 475
AccI GTMKAC 1 cut(s) 1036
AciI CCGC 3 cut(s) 231, 363, 1059
AclWI GGATC 2 cut(s) 45, 1229
AcoI YGGCCR 1 cut(s) 1176
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 1441
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 3 cut(s) 74, 631, 922
AfiI CCNNNNNNNGG 1 cut(s) 300
AflIII ACRYGT 1 cut(s) 965
AgsI TTSAA 5 cut(s) 593, 710, 758, 881, 932
AjnI CCWGG 4 cut(s) 86, 643, 1010, 1301
AleI CACNNNNGTG 1 cut(s) 1391
AloI GAACNNNNNNTCC 4 cut(s) 573, 605, 858, 890
AluBI AGCT 5 cut(s) 69, 132, 541, 886, 1211
AluI AGCT 5 cut(s) 69, 132, 541, 886, 1211
Alw26I GTCTC 2 cut(s) 117, 1412
AlwI GGATC 2 cut(s) 45, 1229
Ama87I CYCGRG 1 cut(s) 1415
AoxI GGCC 5 cut(s) 165, 970, 1030, 1176, 1258
ApeKI GCWGC 2 cut(s) 221, 959
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 2 cut(s) 50, 1443
Asp718I GGTACC 1 cut(s) 72
AspLEI GCGC 4 cut(s) 293, 342, 502, 521
AspS9I GGNCC 2 cut(s) 173, 1452
AsuHPI GGTGA 6 cut(s) 35, 220, 660, 1303, 1318, 1351
AvaI CYCGRG 1 cut(s) 1415
AvaII GGWCC 2 cut(s) 173, 1452
BalI TGGCCA 1 cut(s) 1178
BanI GGYRCC 3 cut(s) 72, 290, 475
BbvI GCAGC 2 cut(s) 233, 971
BccI CCATC 3 cut(s) 97, 669, 932
BceAI ACGGC 3 cut(s) 34, 916, 1017
BciT130I CCWGG 4 cut(s) 88, 645, 1012, 1303
BclI TGATCA 1 cut(s) 1308
BcoDI GTCTC 2 cut(s) 117, 1412
BfaI CTAG 1 cut(s) 1082
BfmI CTRYAG 4 cut(s) 141, 306, 1092, 1389
BfoI RGCGCY 3 cut(s) 294, 503, 522
BisI GCNGC 3 cut(s) 222, 363, 960
BlsI GCNGC 3 cut(s) 223, 364, 961
Bme1390I CCNGG 4 cut(s) 88, 645, 1012, 1303
Bme18I GGWCC 2 cut(s) 173, 1452
BmeT110I CYCGRG 1 cut(s) 1415
BmgT120I GGNCC 2 cut(s) 173, 1452
BmiI GGNNCC 6 cut(s) 74, 85, 174, 292, 477, 1413
BmrFI CCNGG 4 cut(s) 88, 645, 1012, 1303
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 794, 1161
BmuI ACTGGG 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 7 cut(s) 168, 294, 644, 973, 1179, 1217, 1302
BsaWI WCCGGW 1 cut(s) 1243
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 7 cut(s) 67, 96, 312, 845, 918, 1003, 1338
BseBI CCWGG 4 cut(s) 88, 645, 1012, 1303
BseDI CCNNGG 7 cut(s) 168, 294, 644, 973, 1179, 1217, 1302
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 5 cut(s) 55, 128, 261, 318, 1224
BseNI ACTGG 7 cut(s) 67, 96, 312, 845, 918, 1003, 1338
BseRI GAGGAG 1 cut(s) 1045
BseXI GCAGC 2 cut(s) 233, 971
BseYI CCCAGC 1 cut(s) 938
BshFI GGCC 5 cut(s) 167, 972, 1032, 1178, 1260
BshNI GGYRCC 3 cut(s) 72, 290, 475
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 1 cut(s) 1244
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 2 cut(s) 117, 1412
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 5 cut(s) 167, 972, 1032, 1178, 1260
BsoBI CYCGRG 1 cut(s) 1415
Bsp143I GATC 5 cut(s) 37, 235, 357, 1221, 1308
Bsp19I CCATGG 3 cut(s) 294, 1179, 1217
BspACI CCGC 3 cut(s) 231, 363, 1059
BspANI GGCC 5 cut(s) 167, 972, 1032, 1178, 1260
BspCNI CTCAG 5 cut(s) 54, 127, 260, 319, 1225
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 74, 85, 174, 292, 477, 1413
BspPI GGATC 2 cut(s) 45, 1229
BspT107I GGYRCC 3 cut(s) 72, 290, 475
BsrI ACTGG 7 cut(s) 67, 96, 312, 845, 918, 1003, 1338
BssECI CCNNGG 7 cut(s) 168, 294, 644, 973, 1179, 1217, 1302
BssMI GATC 5 cut(s) 37, 235, 357, 1221, 1308
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 5 cut(s) 168, 294, 973, 1179, 1217
Bst2UI CCWGG 4 cut(s) 88, 645, 1012, 1303
Bst4CI ACNGT 5 cut(s) 20, 77, 1072, 1346, 1390
Bst6I CTCTTC 1 cut(s) 1434
BstACI GRCGYC 1 cut(s) 291
BstC8I GCNNGC 5 cut(s) 386, 390, 567, 681, 1030
BstDEI CTNAG 6 cut(s) 41, 114, 247, 327, 887, 1233
BstDSI CCRYGG 3 cut(s) 294, 1179, 1217
BstH2I RGCGCY 3 cut(s) 294, 503, 522
BstHHI GCGC 4 cut(s) 293, 342, 502, 521
BstKTI GATC 5 cut(s) 40, 238, 360, 1224, 1311
BstMAI GTCTC 2 cut(s) 117, 1412
BstMBI GATC 5 cut(s) 37, 235, 357, 1221, 1308
BstMWI GCNNNNNNNGC 5 cut(s) 55, 230, 497, 1149, 1283
BstNI CCWGG 4 cut(s) 88, 645, 1012, 1303
BstNSI RCATGY 1 cut(s) 969
BstSCI CCNGG 4 cut(s) 86, 643, 1010, 1301
BstSFI CTRYAG 4 cut(s) 141, 306, 1092, 1389
BstV1I GCAGC 2 cut(s) 233, 971
BstX2I RGATCY 1 cut(s) 37
BstXI CCANNNNNNTGG 2 cut(s) 103, 1369
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 5 cut(s) 167, 972, 1032, 1178, 1260
BtgI CCRYGG 3 cut(s) 294, 1179, 1217
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 8 cut(s) 25, 255, 319, 1125, 1167, 1351, 1386, 1454
Cac8I GCNNGC 5 cut(s) 386, 390, 567, 681, 1030
CciI TCATGA 1 cut(s) 120
CfoI GCGC 4 cut(s) 293, 342, 502, 521
Cfr13I GGNCC 2 cut(s) 173, 1452
CsiI ACCWGGT 1 cut(s) 1010
Csp6I GTAC 3 cut(s) 73, 630, 921
CviAII CATG 8 cut(s) 121, 295, 427, 966, 1180, 1218, 1315, 1369
CviQI GTAC 3 cut(s) 73, 630, 921
DdeI CTNAG 6 cut(s) 41, 114, 247, 327, 887, 1233
DinI GGCGCC 1 cut(s) 292
DpnI GATC 5 cut(s) 39, 237, 359, 1223, 1310
DpnII GATC 5 cut(s) 37, 235, 357, 1221, 1308
EaeI YGGCCR 1 cut(s) 1176
Eam1104I CTCTTC 1 cut(s) 1434
EarI CTCTTC 1 cut(s) 1434
Eco130I CCWWGG 5 cut(s) 168, 294, 973, 1179, 1217
Eco147I AGGCCT 1 cut(s) 1260
Eco32I GATATC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 173, 1452
Eco57I CTGAAG 1 cut(s) 1441
Eco88I CYCGRG 1 cut(s) 1415
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 4 cut(s) 86, 643, 1010, 1301
EcoRV GATATC 1 cut(s) 602
EcoT14I CCWWGG 5 cut(s) 168, 294, 973, 1179, 1217
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 5 cut(s) 168, 294, 973, 1179, 1217
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 8 cut(s) 124, 298, 430, 969, 1183, 1221, 1318, 1372
FatI CATG 8 cut(s) 120, 294, 426, 965, 1179, 1217, 1314, 1368
FbaI TGATCA 1 cut(s) 1308
FblI GTMKAC 1 cut(s) 1036
Fnu4HI GCNGC 3 cut(s) 222, 363, 960
Fsp4HI GCNGC 3 cut(s) 222, 363, 960
FspBI CTAG 1 cut(s) 1082
GlaI GCGC 4 cut(s) 292, 341, 501, 520
GluI GCNGC 3 cut(s) 222, 363, 960
GsaI CCCAGC 1 cut(s) 942
HaeII RGCGCY 3 cut(s) 294, 503, 522
HaeIII GGCC 5 cut(s) 167, 972, 1032, 1178, 1260
HapII CCGG 1 cut(s) 1244
HhaI GCGC 4 cut(s) 293, 342, 502, 521
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 8 cut(s) 124, 298, 430, 969, 1183, 1221, 1318, 1372
Hin6I GCGC 4 cut(s) 291, 340, 500, 519
HinP1I GCGC 4 cut(s) 291, 340, 500, 519
HincII GTYRAC 1 cut(s) 1037
HindII GTYRAC 1 cut(s) 1037
HinfI GANTC 7 cut(s) 214, 243, 410, 665, 1127, 1237, 1444
HpaII CCGG 1 cut(s) 1244
HphI GGTGA 6 cut(s) 35, 220, 660, 1303, 1318, 1351
Hpy166II GTNNAC 3 cut(s) 1021, 1037, 1296
Hpy188I TCNGA 7 cut(s) 159, 213, 256, 321, 328, 1234, 1460
Hpy188III TCNNGA 5 cut(s) 43, 121, 662, 1415, 1436
Hpy8I GTNNAC 3 cut(s) 1021, 1037, 1296
Hpy99I CGWCG 1 cut(s) 1038
HpyAV CCTTC 4 cut(s) 23, 426, 437, 1201
HpyCH4III ACNGT 5 cut(s) 20, 77, 1072, 1346, 1390
HpyCH4V TGCA 8 cut(s) 58, 491, 608, 721, 818, 959, 1118, 1322
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 230, 497, 1149, 1283
HpyF3I CTNAG 6 cut(s) 41, 114, 247, 327, 887, 1233
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 8 cut(s) 124, 298, 430, 969, 1183, 1221, 1318, 1372
HspAI GCGC 4 cut(s) 291, 340, 500, 519
KasI GGCGCC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 1308
Kzo9I GATC 5 cut(s) 37, 235, 357, 1221, 1308
LmnI GCTCC 3 cut(s) 66, 137, 1208
Lsp1109I GCAGC 2 cut(s) 233, 971
LweI GCATC 2 cut(s) 794, 1161
MabI ACCWGGT 1 cut(s) 1010
MaeI CTAG 1 cut(s) 1082
MaeIII GTNAC 3 cut(s) 547, 1003, 1399
MalI GATC 5 cut(s) 39, 237, 359, 1223, 1310
MboI GATC 5 cut(s) 37, 235, 357, 1221, 1308
MboII GAAGA 8 cut(s) 38, 198, 405, 810, 846, 869, 1232, 1451
MfeI CAATTG 1 cut(s) 1288
MflI RGATCY 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 1178
MluCI AATT 6 cut(s) 182, 508, 861, 894, 1185, 1288
MluNI TGGCCA 1 cut(s) 1178
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 2 cut(s) 208, 237
MmeI TCCRAC 3 cut(s) 236, 420, 1147
Mox20I TGGCCA 1 cut(s) 1178
MroXI GAANNNNTTC 2 cut(s) 50, 1443
MscI TGGCCA 1 cut(s) 1178
MseI TTAA 5 cut(s) 353, 851, 897, 1248, 1254
MslI CAYNNNNRTG 5 cut(s) 673, 1160, 1367, 1373, 1391
Msp20I TGGCCA 1 cut(s) 1178
MspA1I CMGCKG 2 cut(s) 233, 1061
MspI CCGG 1 cut(s) 1244
MspR9I CCNGG 4 cut(s) 88, 645, 1012, 1303
MunI CAATTG 1 cut(s) 1288
MvaI CCWGG 4 cut(s) 88, 645, 1012, 1303
MwoI GCNNNNNNNGC 5 cut(s) 55, 230, 497, 1149, 1283
NarI GGCGCC 1 cut(s) 291
NcoI CCATGG 3 cut(s) 294, 1179, 1217
NdeII GATC 5 cut(s) 37, 235, 357, 1221, 1308
NlaIII CATG 8 cut(s) 124, 298, 430, 969, 1183, 1221, 1318, 1372
NlaIV GGNNCC 6 cut(s) 74, 85, 174, 292, 477, 1413
NmuCI GTSAC 1 cut(s) 1003
NspI RCATGY 1 cut(s) 969
OliI CACNNNNGTG 1 cut(s) 1391
PagI TCATGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 1260
PciI ACATGT 1 cut(s) 965
PdmI GAANNNNTTC 2 cut(s) 50, 1443
PfeI GAWTC 5 cut(s) 410, 665, 1127, 1237, 1444
PkrI GCNGC 3 cut(s) 223, 364, 961
PleI GAGTC 2 cut(s) 208, 237
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 2 cut(s) 208, 237
PpuMI RGGWCCY 1 cut(s) 173
PscI ACATGT 1 cut(s) 965
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 4 cut(s) 86, 643, 1010, 1301
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 4 cut(s) 86, 643, 1010, 1301
PspN4I GGNNCC 6 cut(s) 74, 85, 174, 292, 477, 1413
PspPI GGNCC 2 cut(s) 173, 1452
PspPPI RGGWCCY 1 cut(s) 173
PsrI GAACNNNNNNTAC 2 cut(s) 91, 123
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 3 cut(s) 74, 631, 922
RsaNI GTAC 3 cut(s) 73, 630, 921
RseI CAYNNNNRTG 5 cut(s) 673, 1160, 1367, 1373, 1391
SalI GTCGAC 1 cut(s) 1035
SaqAI TTAA 5 cut(s) 353, 851, 897, 1248, 1254
SatI GCNGC 3 cut(s) 222, 363, 960
Sau3AI GATC 5 cut(s) 37, 235, 357, 1221, 1308
Sau96I GGNCC 2 cut(s) 173, 1452
SchI GAGTC 2 cut(s) 208, 237
ScrFI CCNGG 4 cut(s) 88, 645, 1012, 1303
SexAI ACCWGGT 1 cut(s) 1010
SfaNI GCATC 2 cut(s) 794, 1161
SfcI CTRYAG 4 cut(s) 141, 306, 1092, 1389
SfoI GGCGCC 1 cut(s) 292
SinI GGWCC 2 cut(s) 173, 1452
SmiMI CAYNNNNRTG 5 cut(s) 673, 1160, 1367, 1373, 1391
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 6 cut(s) 182, 508, 861, 894, 1185, 1288
SseBI AGGCCT 1 cut(s) 1260
SsiI CCGC 3 cut(s) 231, 363, 1059
SspDI GGCGCC 1 cut(s) 290
SspI AATATT 2 cut(s) 621, 1252
SspMI CTAG 1 cut(s) 1082
StuI AGGCCT 1 cut(s) 1260
StyD4I CCNGG 4 cut(s) 86, 643, 1010, 1301
StyI CCWWGG 5 cut(s) 168, 294, 973, 1179, 1217
TaaI ACNGT 5 cut(s) 20, 77, 1072, 1346, 1390
TaqI TCGA 2 cut(s) 673, 1036
TasI AATT 6 cut(s) 182, 508, 861, 894, 1185, 1288
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 5 cut(s) 410, 665, 1127, 1237, 1444
Tru1I TTAA 5 cut(s) 353, 851, 897, 1248, 1254
Tru9I TTAA 5 cut(s) 353, 851, 897, 1248, 1254
TscAI CASTG 8 cut(s) 25, 255, 319, 1125, 1167, 1351, 1393, 1454
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 2 cut(s) 221, 959
Tsp45I GTSAC 1 cut(s) 1003
TspDTI ATGAA 2 cut(s) 405, 646
TspGWI ACGGA 2 cut(s) 535, 742
TspRI CASTG 8 cut(s) 25, 255, 319, 1125, 1167, 1351, 1393, 1454
VpaK11BI GGWCC 2 cut(s) 173, 1452
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 969
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 1036
XmnI GAANNNNTTC 2 cut(s) 50, 1443
XspI CTAG 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.