Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

56143372 .. 56144753

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTTCAAAGCAAGAAGAAGAGCGGCGCCTTTTCGGCCAAAATTGAGACTAGTGAGCGAGTGGGGCTTATAGAGGAGGCTAAGAGCGGAAAGAAGAATGAGGTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACCGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTCAATGGAGGTCAACAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTTCTCTCAATTCTAAGTATCACTACGGTGTTCCTTTGGTCCTTGTGAACACGGATAGTACACATGAAAATATGGTGAAGGTGAGAAGTTTAATGCATGGTGTTGACACCGAAGCAAAGATACGAAGCTTAGAGGCCATTGGAACAACTGTTACAGTAAAAGTTCACAGTCCAACTAATTTTAGACGTTCTATTGTTCGGGGCAATGATTTGGGAAGTGATGCCACTGGGCAACCTGCTATCGCAACTACTGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

163

Amino Acids

17.92

Weight (kDa)

6.52

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	2 cut(s)	24, 87
AciI	CCGC	2 cut(s)	24, 87
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	122, 201
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	8, 182
AhlI	ACTAGT	1 cut(s)	50
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	175, 360
AluI	AGCT	2 cut(s)	175, 360
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	36, 366
ApoI	RAATTY	2 cut(s)	122, 201
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	319, 325
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BccI	CCATC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	28, 114
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	153, 442
BmuI	ACTGGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	463, 487
Bse3DI	GCAATG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	442
BseNI	ACTGG	2 cut(s)	463, 487
BseRI	GAGGAG	2 cut(s)	89, 173
BshFI	GGCC	2 cut(s)	38, 368
BshNI	GGYRCC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	38, 368
BspACI	CCGC	2 cut(s)	24, 87
BspANI	GGCC	2 cut(s)	38, 368
BspLI	GGNNCC	2 cut(s)	28, 114
BspMI	ACCTGC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	2 cut(s)	24, 87
BsrDI	GCAATG	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	463, 487
BssNI	GRCGYC	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	260, 382, 388, 401
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	81, 246, 361
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 64, 172
BsuRI	GGCC	2 cut(s)	38, 368
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	475
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	296, 329
CviJI	RGCY	6 cut(s)	38, 67, 80, 175, 360, 368
CviKI_1	RGCY	6 cut(s)	38, 67, 80, 175, 360, 368
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	81, 246, 361
DinI	GGCGCC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	122
EcoT22I	ATGCAT	1 cut(s)	330
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	2 cut(s)	299, 332
FaiI	YATR	4 cut(s)	71, 297, 305, 330
FatI	CATG	2 cut(s)	295, 328
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	38, 368
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	299, 332
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	3 cut(s)	192, 216, 337
HindII	GTYRAC	3 cut(s)	192, 216, 337
HindIII	AAGCTT	2 cut(s)	173, 358
HphI	GGTGA	2 cut(s)	319, 325
Hpy166II	GTNNAC	6 cut(s)	192, 216, 280, 293, 337, 397
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	6 cut(s)	192, 216, 280, 293, 337, 397
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	4 cut(s)	260, 382, 388, 401
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 64, 172
HpyF3I	CTNAG	3 cut(s)	81, 246, 361
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	299, 332
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	152, 444, 468, 480
LweI	GCATC	2 cut(s)	153, 442
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	382
MbiI	CCGCTC	2 cut(s)	24, 87
MboII	GAAGA	3 cut(s)	28, 31, 106
MluCI	AATT	7 cut(s)	42, 122, 153, 201, 231, 241, 409
Mly113I	GGCGCC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	67, 70, 94, 151, 180, 358, 479
Mph1103I	ATGCAT	1 cut(s)	330
MseI	TTAA	2 cut(s)	230, 323
MslI	CAYNNNNRTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	35, 64, 172
NarI	GGCGCC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	299, 332
NlaIV	GGNNCC	2 cut(s)	28, 114
NsiI	ATGCAT	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	26
PluTI	GGCGCC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	28, 114
PspPI	GGNCC	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	230, 323
SatI	GCNGC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	271
SetI	ASST	7 cut(s)	105, 177, 191, 315, 362, 421, 469
SfaNI	GCATC	2 cut(s)	153, 442
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	258
SpeI	ACTAGT	1 cut(s)	50
Sse9I	AATT	7 cut(s)	42, 122, 153, 201, 231, 241, 409
SsiI	CCGC	2 cut(s)	24, 87
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	260, 382, 388, 401
TaiI	ACGT	1 cut(s)	421
TasI	AATT	7 cut(s)	42, 122, 153, 201, 231, 241, 409
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	230, 323
Tru9I	TTAA	2 cut(s)	230, 323
TscAI	CASTG	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	122, 201
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.