Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

34337462 .. 34338331

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATACTGGGAGCTGGTACCGGATGGTTTCCAGGCAATCCAATATGATGGGTTTGTCTCAGGTCATGAGGGATAGCTCCATTTCTGTAGTCGCTTGTGTTCTGATTGTCGCTTTGGGTCCTATCCAATTCGGCTTCACTATAAAAATGAGAATTGCCAGTTTGATTTTTGCGTGTTGTTTGTTGCAGTCTGGATATTCTTCTCCGACTAAAGCAACAATCATCGTTGATCTTGGACTCTCAGTGTCAGAGTATTCTCTTTTTGGTTCTTTATCAAATGTGGGTGCCATGGTGGGGGCTATAGCCAGTGTGTTTGAGATTTTAACATCCATTATTATTCTGTGTTGGTTGCAGTCTTTAATGATCGCCGCCATTCCTAATGTCATCGATTCTTCATTTCTCTACATGGGAAGGTTGTTGGAAGGATTTGGCATGGGAATAATCTCGTATGTGGTAATGATCAGTTGTTCAATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

159

Amino Acids

17.11

Weight (kDa)

7.61

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	2 cut(s)	18, 284
AciI	CCGC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	471
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	15, 78
AluI	AGCT	2 cut(s)	15, 78
Alw26I	GTCTC	1 cut(s)	63
Asp718I	GGTACC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BanI	GGYRCC	2 cut(s)	18, 284
BccI	CCATC	2 cut(s)	19, 43
BciT130I	CCWGG	1 cut(s)	34
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	87, 300
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	20, 120, 286
BmrFI	CCNGG	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	3 cut(s)	13, 159, 306
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	30, 326
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	74, 255
BseNI	ACTGG	3 cut(s)	13, 159, 306
BshNI	GGYRCC	2 cut(s)	18, 284
BshVI	ATCGAT	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	229, 363, 459
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	73, 254
BspDI	ATCGAT	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	20, 120, 286
BspT107I	GGYRCC	2 cut(s)	18, 284
BsrI	ACTGG	3 cut(s)	13, 159, 306
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	229, 363, 459
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	60, 241
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	30, 326
BstKTI	GATC	3 cut(s)	232, 366, 462
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	229, 363, 459
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	2 cut(s)	87, 300
BstXI	CCANNNNNNTGG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	30, 326
BtsIMutI	CAGTG	2 cut(s)	249, 313
CciI	TCATGA	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	67, 289, 406, 433
CviJI	RGCY	5 cut(s)	15, 78, 135, 299, 305
CviKI_1	RGCY	5 cut(s)	15, 78, 135, 299, 305
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	60, 241
DpnI	GATC	3 cut(s)	231, 365, 461
DpnII	GATC	3 cut(s)	229, 363, 459
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	70, 292, 409, 436
FaiI	YATR	9 cut(s)	6, 47, 68, 143, 290, 302, 407, 434, 450
FatI	CATG	4 cut(s)	66, 288, 405, 432
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	37, 313
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	4 cut(s)	70, 292, 409, 436
HinfI	GANTC	2 cut(s)	237, 389
HpaII	CCGG	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	105, 207, 250
Hpy188III	TCNNGA	2 cut(s)	67, 192
HpyAV	CCTTC	2 cut(s)	405, 416
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	4, 187, 352
HpyF3I	CTNAG	2 cut(s)	60, 241
Hsp92II	CATG	4 cut(s)	70, 292, 409, 436
KpnI	GGTACC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	229, 363, 459
LmnI	GCTCC	2 cut(s)	12, 83
LpnPI	CCDG	7 cut(s)	19, 35, 46, 47, 172, 177, 319
MalI	GATC	3 cut(s)	231, 365, 461
MboI	GATC	3 cut(s)	229, 363, 459
MboII	GAAGA	2 cut(s)	192, 384
MluCI	AATT	2 cut(s)	128, 153
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	230, 399
MnlI	CCTC	1 cut(s)	63
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	323, 359
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	229, 363, 459
NlaIII	CATG	4 cut(s)	70, 292, 409, 436
NlaIV	GGNNCC	3 cut(s)	20, 120, 286
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	20, 120, 286
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	323, 359
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	229, 363, 459
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	4 cut(s)	17, 66, 80, 416
SfcI	CTRYAG	2 cut(s)	87, 300
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	2 cut(s)	128, 153
SsiI	CCGC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	128, 153
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	323, 359
Tru9I	TTAA	2 cut(s)	323, 359
TscAI	CASTG	2 cut(s)	249, 313
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	2 cut(s)	249, 313
VpaK11BI	GGWCC	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.