Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

25482233 .. 25482707

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGGAACTTTGTTATTCTCTTTTTGGTTCTTTATCAAATGTGGGTGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCACCATTCCTAATGTCATCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

46

Amino Acids

4.72

Weight (kDa)

5.89

Isoelectric Point (pI)

4.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	5 - 46	2.7e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	111
Bsp19I	CCATGG	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	96
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	3 cut(s)	59, 65, 138
CviKI_1	RGCY	3 cut(s)	59, 65, 138
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 62, 87
FatI	CATG	1 cut(s)	48
FspBI	CTAG	1 cut(s)	139
GlaI	GCGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	75, 82
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	1 cut(s)	79
MaeI	CTAG	1 cut(s)	139
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MseI	TTAA	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	2 cut(s)	61, 78
SspMI	CTAG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	73
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.