Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

84071524 .. 84073627

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG617500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCTACTGATGTTGAGAAAATTGAGGAGATGTTGGACAAGCTTGTTCAATGGAGGTCAACAATGGAAATTTTTGATGGATTGACATCTCTTGACTTAATTGTTAATCAAATTGAGTCTCTCAATTCTAAGTATCACTGCAGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAAATACGCTGAAGCATGCTTACAACCCAGATGAGGAGTATGCAGAGGTAGAATCCAGATTGCGTTCACATTTGGAATCTTTTCTAGAAACTACAAGATCATTCAATATGATTTACACCAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

102

Amino Acids

11.9

Weight (kDa)

4.73

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	19 - 68	5.3e-11	UTP--glucose-1-phosphate uridylyltransferase
Plant_NMP1	PF06694	59 - 101	5.8e-14	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	50, 286
AleI	CACNNNNGTG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	41, 230
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	129
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	139
BtsI	GCAGTG	2 cut(s)	136, 148
BtsIMutI	CAGTG	2 cut(s)	136, 148
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	179, 197
CviJI	RGCY	1 cut(s)	43
CviKI_1	RGCY	1 cut(s)	43
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	182, 200
FaiI	YATR	4 cut(s)	180, 198, 222, 290
FatI	CATG	2 cut(s)	178, 196
FblI	GTMKAC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	182, 200
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	116, 233, 257
Hpy166II	GTNNAC	5 cut(s)	6, 60, 163, 176, 248
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	92, 237, 266
Hpy8I	GTNNAC	5 cut(s)	6, 60, 163, 176, 248
HpyCH4V	TGCA	2 cut(s)	141, 224
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	182, 200
Kzo9I	GATC	1 cut(s)	278
LpnPI	CCDG	2 cut(s)	222, 250
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MluCI	AATT	5 cut(s)	21, 69, 99, 111, 124
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	19, 48, 208, 220
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	98, 105
MslI	CAYNNNNRTG	1 cut(s)	141
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	182, 200
NspI	RCATGY	1 cut(s)	200
OliI	CACNNNNGTG	1 cut(s)	141
PaeI	GCATGC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	233, 257
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	98, 105
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	125
SetI	ASST	4 cut(s)	45, 59, 231, 306
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	5 cut(s)	21, 69, 99, 111, 124
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	300
TasI	AATT	5 cut(s)	21, 69, 99, 111, 124
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	233, 257
Tru1I	TTAA	2 cut(s)	98, 105
Tru9I	TTAA	2 cut(s)	98, 105
TscAI	CASTG	2 cut(s)	143, 148
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	143, 148
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.