Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

48449475 .. 48449719

Gene Structure 245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG350800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGGTTCGTCTCAGGTCATGAGAGATAGCTCCATTTCTGTAGTCGCTTGTGTTCTGATTGTCGCTTTGGGTCCTATCCAATTCGGCTTCACTTCTGGATATTCTTCTCTGACTCAAGCAGCAATCATCGTTGATCTTGGACTCTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

50

Amino Acids

5.09

Weight (kDa)

4.21

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	72
BssMI	GATC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	12, 145
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	2 cut(s)	30, 87
CviKI_1	RGCY	2 cut(s)	30, 87
DdeI	CTNAG	2 cut(s)	12, 145
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspEI	CC	8 cut(s)	46, 53, 54, 69, 81, 87, 92, 123
GluI	GCNGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	2 cut(s)	112, 141
Hpy188I	TCNGA	2 cut(s)	57, 111
Hpy188III	TCNNGA	2 cut(s)	19, 96
HpyF3I	CTNAG	2 cut(s)	12, 145
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	131
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	96
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	106, 135
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	106, 135
PpsI	GAGTC	2 cut(s)	106, 135
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	2 cut(s)	106, 135
SetI	ASST	2 cut(s)	18, 32
SfcI	CTRYAG	1 cut(s)	39
SgeI	CNNG	6 cut(s)	26, 31, 60, 108, 128, 149
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	80
TasI	AATT	1 cut(s)	80
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	119
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.