Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

61015096 .. 61020092

Gene Structure 4997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG415200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAGTTTCAGGGAGGACAGTGGTGAAGAAGGGAGGGATCTCAGGAAGCCGTTCCTGCATACTGGGAGCTGGTACCGTATGGGTTCCAGGCAATCCAGTATGATGGGTTCGTCTCAGGTCATGAGGGATAGCTCCATTTCTGTAGTGGCTTGTGTTCTGATTGTGGCCTTGGGTCCTATCCAATTCGGCTTCACTTCTGGGTATTCTTCTCCGACTCAATCAGCAATCACCGCTGATCTTGGACTCTCAGTGTCAGAGTATTCTCTTTTTGGTTCTTTATCAAATGTGGGCGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCGCCATTCCTAATGTCATCGGCTGGCTTGCCATATCATTTGCCAAAGATTCTTCATTTCTCTACATGGGAAGGTTGTTGGAAGGGTTTGGCGTGGGAATAATCTCGTACGTGGTGCCTGTATATATTGCAGAGATAGCGCCTCAAAATTTGAGAGGCGCTTTGGGTTCAGTCAATCAGCTCTCCGTAACCATTGGGATAATGCTGGCTTATGTGCTTGGACTTTTTGTTCAATGGAGATATCTTGCAGTTTTGGGAATATTGCCTTGTACGATATTGATACCTGGGCTGTTTTTCATTCCAGAATCACCTCGATGGCTGGCAAAAATGGGTATGACAGACGATTTTGAAGCCTCTTTGCAAGTTCTACGGGGATTTGATACTGATATTTCCGTTGAAGTGAACGAGATAAAGAGGTCTGTGGCATCAACAACCAGAAGAACAACAATAAGGTTTGCAGAACTCAAACAAAGAAGATACTGGCTTCCTTTAATGATTGGAATTGGATTACTTGTTCTTCAACAGCTTAGTGGAATTAACGGCGTTCTATTCTATTCCAGTACCATCTTTGAAACTGCTGGGATTACATCAAGTAATGCAGCCACATGTGGCCTTGGTGCTGTTCAGGTCTTAGCAACTGGTGTGACTACCTGGTTGGTGGACAGAGCAGGCCGTCGACTTCTGCTTATTATCTCCTCCGCTGGAATGACAGTTAGCCTCCTAGTTGTTGCTGTAGCATTTTATCTAAAGGATTATGCAGTGGTTGATTCAGGTTTTTATAGCGTGTTGAGTATCATTTCAGTGGTTGGAGTTGTGGTAAGTTTATATTTTAATTATCATAATTCAGAGAAGATTTCTGTTCTTTTTCTGCCTGTAAATTCCTTTGTCTTGCACTATTCTTTCAGGCCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

424

Amino Acids

46.01

Weight (kDa)

8.87

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	52 - 393	4.9e-74	Sugar (and other) transporter
MFS_1	PF07690	62 - 395	1.4e-24	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	3 cut(s)	72, 290, 475
AccI	GTMKAC	1 cut(s)	1036
AciI	CCGC	3 cut(s)	231, 363, 1059
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	508, 1237
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	4 cut(s)	74, 470, 631, 922
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflIII	ACRYGT	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	593, 710, 758, 881, 932
AjnI	CCWGG	3 cut(s)	86, 643, 1010
AloI	GAACNNNNNNTCC	4 cut(s)	573, 605, 858, 890
AluBI	AGCT	4 cut(s)	69, 132, 541, 886
AluI	AGCT	4 cut(s)	69, 132, 541, 886
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	4 cut(s)	165, 970, 1030, 1265
ApeKI	GCWGC	1 cut(s)	959
ApoI	RAATTY	2 cut(s)	508, 1237
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	72
AspLEI	GCGC	4 cut(s)	293, 342, 502, 521
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	35, 220, 660
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	3 cut(s)	72, 290, 475
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	3 cut(s)	97, 669, 932
BceAI	ACGGC	3 cut(s)	34, 916, 1017
BciT130I	CCWGG	3 cut(s)	88, 645, 1012
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	1082
BfmI	CTRYAG	3 cut(s)	141, 306, 1092
BfoI	RGCGCY	3 cut(s)	294, 503, 522
BisI	GCNGC	2 cut(s)	363, 960
BlsI	GCNGC	2 cut(s)	364, 961
Bme1390I	CCNGG	3 cut(s)	88, 645, 1012
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
BmrFI	CCNGG	3 cut(s)	88, 645, 1012
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	5 cut(s)	168, 294, 644, 973, 1268
BsaXI	ACNNNNNCTCC	2 cut(s)	1161, 1191
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BseBI	CCWGG	3 cut(s)	88, 645, 1012
BseDI	CCNNGG	5 cut(s)	168, 294, 644, 973, 1268
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	55, 128, 261, 318
BseNI	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BseRI	GAGGAG	1 cut(s)	1045
BseXI	GCAGC	1 cut(s)	971
BseYI	CCCAGC	1 cut(s)	938
BshFI	GGCC	4 cut(s)	167, 972, 1032, 1267
BshNI	GGYRCC	3 cut(s)	72, 290, 475
BsiWI	CGTACG	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	4 cut(s)	167, 972, 1032, 1267
Bsp143I	GATC	3 cut(s)	37, 235, 357
Bsp19I	CCATGG	2 cut(s)	294, 1268
BspACI	CCGC	3 cut(s)	231, 363, 1059
BspANI	GGCC	4 cut(s)	167, 972, 1032, 1267
BspCNI	CTCAG	4 cut(s)	54, 127, 260, 319
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	3 cut(s)	72, 290, 475
BsrI	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BssECI	CCNNGG	5 cut(s)	168, 294, 644, 973, 1268
BssMI	GATC	3 cut(s)	37, 235, 357
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	4 cut(s)	168, 294, 973, 1268
Bst2UI	CCWGG	3 cut(s)	88, 645, 1012
Bst4CI	ACNGT	3 cut(s)	20, 77, 1072
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	5 cut(s)	386, 390, 567, 681, 1030
BstDEI	CTNAG	6 cut(s)	41, 114, 247, 327, 887, 991
BstDSI	CCRYGG	2 cut(s)	294, 1268
BstH2I	RGCGCY	3 cut(s)	294, 503, 522
BstHHI	GCGC	4 cut(s)	293, 342, 502, 521
BstKTI	GATC	3 cut(s)	40, 238, 360
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	37, 235, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
BstNI	CCWGG	3 cut(s)	88, 645, 1012
BstNSI	RCATGY	1 cut(s)	969
BstSCI	CCNGG	3 cut(s)	86, 643, 1010
BstSFI	CTRYAG	3 cut(s)	141, 306, 1092
BstV1I	GCAGC	1 cut(s)	971
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	167, 972, 1032, 1267
BtgI	CCRYGG	2 cut(s)	294, 1268
BtsI	GCAGTG	1 cut(s)	1125
BtsIMutI	CAGTG	5 cut(s)	25, 255, 319, 1125, 1167
Cac8I	GCNNGC	5 cut(s)	386, 390, 567, 681, 1030
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	4 cut(s)	293, 342, 502, 521
Cfr13I	GGNCC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	1010
Csp6I	GTAC	4 cut(s)	73, 469, 630, 921
CviAII	CATG	5 cut(s)	121, 295, 427, 966, 1269
CviQI	GTAC	4 cut(s)	73, 469, 630, 921
DdeI	CTNAG	6 cut(s)	41, 114, 247, 327, 887, 991
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	3 cut(s)	39, 237, 359
DpnII	GATC	3 cut(s)	37, 235, 357
Eco130I	CCWWGG	4 cut(s)	168, 294, 973, 1268
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	86, 643, 1010
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	4 cut(s)	168, 294, 973, 1268
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	4 cut(s)	168, 294, 973, 1268
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	5 cut(s)	124, 298, 430, 969, 1272
FatI	CATG	5 cut(s)	120, 294, 426, 965, 1268
FblI	GTMKAC	1 cut(s)	1036
Fnu4HI	GCNGC	2 cut(s)	363, 960
Fsp4HI	GCNGC	2 cut(s)	363, 960
FspBI	CTAG	1 cut(s)	1082
GlaI	GCGC	4 cut(s)	292, 341, 501, 520
GluI	GCNGC	2 cut(s)	363, 960
GsaI	CCCAGC	1 cut(s)	942
HaeII	RGCGCY	3 cut(s)	294, 503, 522
HaeIII	GGCC	4 cut(s)	167, 972, 1032, 1267
HhaI	GCGC	4 cut(s)	293, 342, 502, 521
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	124, 298, 430, 969, 1272
Hin6I	GCGC	4 cut(s)	291, 340, 500, 519
HinP1I	GCGC	4 cut(s)	291, 340, 500, 519
HincII	GTYRAC	1 cut(s)	1037
HindII	GTYRAC	1 cut(s)	1037
HinfI	GANTC	5 cut(s)	214, 243, 410, 665, 1127
HphI	GGTGA	3 cut(s)	35, 220, 660
Hpy166II	GTNNAC	3 cut(s)	763, 1021, 1037
Hpy188I	TCNGA	6 cut(s)	159, 213, 256, 321, 328, 1207
Hpy188III	TCNNGA	3 cut(s)	43, 121, 662
Hpy8I	GTNNAC	3 cut(s)	763, 1021, 1037
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	3 cut(s)	23, 426, 437
HpyCH4III	ACNGT	3 cut(s)	20, 77, 1072
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	8 cut(s)	58, 491, 608, 721, 818, 959, 1118, 1252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
HpyF3I	CTNAG	6 cut(s)	41, 114, 247, 327, 887, 991
HpySE526I	ACGT	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	124, 298, 430, 969, 1272
HspAI	GCGC	4 cut(s)	291, 340, 500, 519
KasI	GGCGCC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	37, 235, 357
LmnI	GCTCC	2 cut(s)	66, 137
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	1 cut(s)	794
MabI	ACCWGGT	1 cut(s)	1010
MaeI	CTAG	1 cut(s)	1082
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	547, 1003
MalI	GATC	3 cut(s)	39, 237, 359
MboI	GATC	3 cut(s)	37, 235, 357
MboII	GAAGA	7 cut(s)	38, 198, 405, 810, 846, 869, 1222
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	7 cut(s)	182, 508, 861, 894, 1192, 1201, 1237
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	208, 237
MmeI	TCCRAC	3 cut(s)	236, 420, 1147
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	4 cut(s)	353, 851, 897, 1191
MslI	CAYNNNNRTG	2 cut(s)	673, 1160
MspA1I	CMGCKG	2 cut(s)	233, 1061
MspR9I	CCNGG	3 cut(s)	88, 645, 1012
MvaI	CCWGG	3 cut(s)	88, 645, 1012
MwoI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
NarI	GGCGCC	1 cut(s)	291
NcoI	CCATGG	2 cut(s)	294, 1268
NdeII	GATC	3 cut(s)	37, 235, 357
NlaIII	CATG	5 cut(s)	124, 298, 430, 969, 1272
NlaIV	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
NmuCI	GTSAC	1 cut(s)	1003
NspI	RCATGY	1 cut(s)	969
PagI	TCATGA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	965
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	410, 665, 1127
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	364, 961
PleI	GAGTC	2 cut(s)	208, 237
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	208, 237
Ppu21I	YACGTR	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	173
PscI	ACATGT	1 cut(s)	965
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	86, 643, 1010
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	3 cut(s)	86, 643, 1010
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	4 cut(s)	74, 470, 631, 922
RsaNI	GTAC	4 cut(s)	73, 469, 630, 921
RseI	CAYNNNNRTG	2 cut(s)	673, 1160
SalI	GTCGAC	1 cut(s)	1035
SaqAI	TTAA	4 cut(s)	353, 851, 897, 1191
SatI	GCNGC	2 cut(s)	363, 960
Sau3AI	GATC	3 cut(s)	37, 235, 357
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	208, 237
ScrFI	CCNGG	3 cut(s)	88, 645, 1012
SexAI	ACCWGGT	1 cut(s)	1010
SfaNI	GCATC	1 cut(s)	794
SfcI	CTRYAG	3 cut(s)	141, 306, 1092
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	673, 1160
Sse9I	AATT	7 cut(s)	182, 508, 861, 894, 1192, 1201, 1237
SsiI	CCGC	3 cut(s)	231, 363, 1059
SspDI	GGCGCC	1 cut(s)	290
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	1082
StyD4I	CCNGG	3 cut(s)	86, 643, 1010
StyI	CCWWGG	4 cut(s)	168, 294, 973, 1268
TaaI	ACNGT	3 cut(s)	20, 77, 1072
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	673, 1036
TasI	AATT	7 cut(s)	182, 508, 861, 894, 1192, 1201, 1237
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	3 cut(s)	410, 665, 1127
Tru1I	TTAA	4 cut(s)	353, 851, 897, 1191
Tru9I	TTAA	4 cut(s)	353, 851, 897, 1191
TscAI	CASTG	5 cut(s)	25, 255, 319, 1125, 1167
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	2 cut(s)	405, 646
TspGWI	ACGGA	2 cut(s)	535, 742
TspRI	CASTG	5 cut(s)	25, 255, 319, 1125, 1167
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	508, 1237
XceI	RCATGY	1 cut(s)	969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	1036
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.