RLG00000023030

Plant nuclear matrix protein 1 (NMP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001989
Physical Location & Seq
Reverse (-)
16890273 .. 16892643
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023030

Sequence Viewer

Length: 492 bp
ATGAGGAAGAGCGGGCTGGTGGTGGAGGAGATGGCAGCCGAAGAGGGTGGTGAGAGTGCGAGCGGCCGCTGGGTTTCAGGGAGGACAGTGGTGAAGAAGGGAGGGATACCAGAAAGCCGTTCCTGCATACTGGGACCTGGTACCGGATGGGTTCCAGGCAATCCATCTGGATATTCTTCTCTGACTCAAGCAACAATCATCATTGATCTTGGACTCTCAGTGTCAGAGATCTCGTTGAGGCAAGCAATTGTACTGATAATCCAGAATGGAGGTTATGATAATACAGAGCATGATGTTTCTGAGCTGGAGCAAAAGCTTACAGAACAATCAAAGATACTGTCAAATCTTCAACAAAAGGTTGATGATTTGGCATCAAAGCATGGTTACAACCCAGATGAGGAGTATGCAGAGGTAGAATCCAGATTGCGTTCACATTTGGAATCTTTTCTAAAAACTACAAGATCATTCAATATGATTTACACCGAGGTCTGA

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

5.01

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 98 - 162 4.1e-25 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AccBSI CCGCTC 2 cut(s) 12, 63
AciI CCGC 3 cut(s) 12, 63, 67
AcoI YGGCCR 1 cut(s) 64
AfaI GTAC 2 cut(s) 142, 252
AfiI CCNNNNNNNGG 2 cut(s) 143, 397
AgsI TTSAA 2 cut(s) 350, 469
AjnI CCWGG 2 cut(s) 136, 154
AluBI AGCT 2 cut(s) 304, 316
AluI AGCT 2 cut(s) 304, 316
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp700I GAANNNNTTC 1 cut(s) 444
Asp718I GGTACC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 62, 103
AvaII GGWCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 47
BccI CCATC 3 cut(s) 25, 141, 172
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 2 cut(s) 138, 156
BciVI GTATCC 1 cut(s) 99
BfuI GTATCC 1 cut(s) 99
BglII AGATCT 1 cut(s) 228
BisI GCNGC 3 cut(s) 36, 64, 67
BlsI GCNGC 3 cut(s) 37, 65, 68
Bme1390I CCNGG 2 cut(s) 138, 156
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 135, 142, 153
BmrFI CCNGG 2 cut(s) 138, 156
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 380
BmuI ACTGGG 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 397
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 138, 156
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 143, 397
BseMII CTCAG 2 cut(s) 231, 291
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 41, 413
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 143, 397
BsmFI GGGAC 1 cut(s) 147
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 3 cut(s) 205, 228, 461
BspACI CCGC 3 cut(s) 12, 63, 67
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 230, 292
BspLI GGNNCC 3 cut(s) 135, 142, 153
BspQI GCTCTTC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 140
BsrBI CCGCTC 2 cut(s) 12, 63
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 3 cut(s) 205, 228, 461
Bst2UI CCWGG 2 cut(s) 138, 156
Bst4CI ACNGT 2 cut(s) 88, 339
Bst6I CTCTTC 2 cut(s) 2, 36
BstC8I GCNNGC 3 cut(s) 14, 61, 243
BstDEI CTNAG 2 cut(s) 217, 300
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 3 cut(s) 208, 231, 464
BstMBI GATC 3 cut(s) 205, 228, 461
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 138, 156
BstSCI CCNGG 2 cut(s) 136, 154
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 64
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 93, 225
Cac8I GCNNGC 3 cut(s) 14, 61, 243
CciNI GCGGCCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 2 cut(s) 141, 251
CviAII CATG 2 cut(s) 290, 380
CviJI RGCY 6 cut(s) 16, 38, 66, 117, 304, 316
CviKI_1 RGCY 6 cut(s) 16, 38, 66, 117, 304, 316
CviQI GTAC 2 cut(s) 141, 251
DdeI CTNAG 2 cut(s) 217, 300
DpnI GATC 3 cut(s) 207, 230, 463
DpnII GATC 3 cut(s) 205, 228, 461
EaeI YGGCCR 1 cut(s) 64
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 2, 36
EarI CTCTTC 2 cut(s) 2, 36
EclXI CGGCCG 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 136, 154
FaeI CATG 2 cut(s) 293, 383
FaiI YATR 6 cut(s) 128, 276, 291, 381, 405, 473
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 289, 379
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 36, 64, 67
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 36, 64, 67
GluI GCNGC 3 cut(s) 36, 64, 67
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 293, 383
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 184, 213, 416, 440
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 62, 103
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 4 cut(s) 183, 226, 301, 491
Hpy188III TCNNGA 3 cut(s) 168, 262, 420
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 88, 339
HpyCH4V TGCA 2 cut(s) 126, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 217, 300
Hsp92II CATG 2 cut(s) 293, 383
KpnI GGTACC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 205, 228, 461
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 380
MabI ACCWGGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 383
MalI GATC 3 cut(s) 207, 230, 463
MbiI CCGCTC 2 cut(s) 12, 63
MboI GATC 3 cut(s) 205, 228, 461
MboII GAAGA 5 cut(s) 19, 53, 106, 168, 338
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 246
MlyI GAGTC 2 cut(s) 178, 207
MnlI CCTC 9 cut(s) 19, 37, 75, 95, 231, 263, 391, 403, 478
MroXI GAANNNNTTC 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 138, 156
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 2 cut(s) 138, 156
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 3 cut(s) 205, 228, 461
NlaIII CATG 2 cut(s) 293, 383
NlaIV GGNNCC 3 cut(s) 135, 142, 153
NotI GCGGCCGC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 2
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 416, 440
PkrI GCNGC 3 cut(s) 37, 65, 68
PleI GAGTC 2 cut(s) 178, 207
PpsI GAGTC 2 cut(s) 178, 207
PpuMI RGGWCCY 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 136, 154
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 2 cut(s) 136, 154
PspN4I GGNNCC 3 cut(s) 135, 142, 153
PspPI GGNCC 1 cut(s) 134
PspPPI RGGWCCY 1 cut(s) 134
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 2 cut(s) 142, 252
RsaNI GTAC 2 cut(s) 141, 251
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 3 cut(s) 36, 64, 67
Sau3AI GATC 3 cut(s) 205, 228, 461
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 178, 207
ScrFI CCNGG 2 cut(s) 138, 156
SetI ASST 7 cut(s) 139, 274, 306, 318, 360, 414, 489
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 1 cut(s) 380
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 246
SsiI CCGC 3 cut(s) 12, 63, 67
StyD4I CCNGG 2 cut(s) 136, 154
TaaI ACNGT 2 cut(s) 88, 339
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 250
TauI GCSGC 2 cut(s) 66, 69
TfiI GAWTC 2 cut(s) 416, 440
TscAI CASTG 2 cut(s) 93, 225
TseI GCWGC 1 cut(s) 35
TspRI CASTG 2 cut(s) 93, 225
VpaK11BI GGWCC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.