MD08G1030900.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
2208824 .. 2213052
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1030900.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGAGTTTCCGGGACGACAATGAGGAGGGGAGGGGAGATCTCCGGAAGCCCTTCCTCCACACTGGGAGCTGGTACCGCATGGGTTCCAGGCAATCCAGCATGATGGGCTCGCAGGTGATCCGTGATAGCTCCATTTCTGTTGTCGCTTGCGTCTTGATTGTCGCTCTGGGTCCTATTCAATTCGGCTTCACCTCTGGCTATTCATCTCCGACCCAATCCGCAATCATCAAGGATCTTGGACTCACAGTATCAGAGTTTTCGCTTTTCGGTTCTTTGTCGAATGTGGGAGCTATGGTTGGAGCCATAGCCAGCGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCTGCTATTCCTAATGTTATCGGTTGGCTTGCCATATCATTTGCCAAGGATTCTTCTTTTCTTTACATGGGAAGGTTGTTGGAAGGATTCGGCGTGGGAATAATCTCCTACACGGTGCCGGTATATATAGCTGAGATAGCACCTCAAAACTTGAGAGGTGCTTTGGGTTCAGTCAATCAGCTCTCTGTAACAATTGGGATAATGCTGGCTTATCTGCTTGGACTTTTTGTTCCATGGAGGATACTTGCTGTTCTGGGAATATTGCCTTGTACGATATTGATACCTGGGCTCTTTTTCATTCCAGAGTCTCCTCGATGGCTGGCAAAAATGGGTATGACAGAGGATTTTGAAGCTTCCCTGCAAGTTCTTCGAGGATTTGATACTGATATCTCGGTTGAAGTCAGTGAAATCAAGAGGTCTGTGGCATCATCAACCAGAAAAACAACAATTCGGTTTGCAGAACTCAAACAAAGAAGATATTGGCTTCCTTTAATGATTGGAATTGGTTTACTTGTTCTTCAACAACTAAGTGGAATTAACGGTGTTCTATTCTATTCCAGTACCATTTTTGCAACTGCCGGGATTTCTTCAAGTAACGTAGCCACAGTTGGTCTCGGTGCTGTTCAGGTCATAGCGACTGGCGTGACTACATGGTTGGCAGACAAAGCAGGCCGTCGTCTTTTGCTTATTATCTCATCTGTTGGAATGACAATTTTCCTCCTCATTGTTGCGATAGCATTCTACATAAAGGATTTTGTCGATGTTGATTCAAATATTTATAGCATATTGGGCATCATATCAGTGGTTGGAGTTGTGGCCATGGTAATTGCATTCTCTCTTGGTTTGGGAGCTATTCCATGGTTAATAATGTCTGAGATTCTTCCAGTTAATATTAAAGGCCTTGCTGGAAGCATAGCAACACTTGCCAATTGGTTCGTAGCCTGGGTGATCACGATGACAGCAAACTTGCTACTGGAATGGAGCAGTGGAGGAACCTTCACCATTTACATGGTGGTGAGTGCTTTCACCGTTGTATTTGTTGCCATTTGGGTTCCGGAGACAAAGGGGAGAACTCTGGAAGAGATCCAATGGTCCTTCAGATAA

Protein Analysis

487

Amino Acids

52.49

Weight (kDa)

8.75

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 51 - 485 1.2e-98 Sugar (and other) transporter
MFS_1 PF07690 61 - 435 5.1e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 2 cut(s) 72, 472
AccIII TCCGGA 2 cut(s) 42, 1411
AciI CCGC 3 cut(s) 76, 219, 312
AclWI GGATC 3 cut(s) 112, 240, 1435
AcoI YGGCCR 1 cut(s) 1173
AcuI CTGAAG 1 cut(s) 1438
AfaI GTAC 3 cut(s) 74, 628, 919
AgsI TTSAA 6 cut(s) 179, 707, 755, 878, 948, 1128
AjnI CCWGG 3 cut(s) 86, 640, 1298
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
AluBI AGCT 7 cut(s) 69, 129, 290, 488, 538, 710, 1208
AluI AGCT 7 cut(s) 69, 129, 290, 488, 538, 710, 1208
Alw26I GTCTC 3 cut(s) 669, 974, 1409
AlwI GGATC 3 cut(s) 112, 240, 1435
Aor13HI TCCGGA 2 cut(s) 42, 1411
AoxI GGCC 3 cut(s) 1027, 1173, 1255
ApeKI GCWGC 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 170, 1449
AsuC2I CCSGG 2 cut(s) 11, 937
AsuHPI GGTGA 6 cut(s) 127, 181, 1315, 1348, 1375, 1384
AvaII GGWCC 2 cut(s) 170, 1449
BalI TGGCCA 1 cut(s) 1175
BanI GGYRCC 2 cut(s) 72, 472
BanII GRGCYC 2 cut(s) 110, 648
BbvI GCAGC 1 cut(s) 346
BccI CCATC 2 cut(s) 97, 666
BceAI ACGGC 1 cut(s) 1014
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 3 cut(s) 88, 642, 1300
BciVI GTATCC 1 cut(s) 591
BclI TGATCA 1 cut(s) 1305
BcnI CCSGG 2 cut(s) 11, 937
BcoDI GTCTC 3 cut(s) 669, 974, 1409
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 591
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 5 cut(s) 11, 88, 642, 937, 1300
Bme18I GGWCC 2 cut(s) 170, 1449
BmgT120I GGNCC 2 cut(s) 170, 1449
BmiI GGNNCC 7 cut(s) 74, 85, 171, 301, 474, 1351, 1410
BmrFI CCNGG 5 cut(s) 11, 88, 642, 937, 1300
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 791, 1158
BmuI ACTGGG 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 529
BpuMI CCSGG 2 cut(s) 11, 937
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 6 cut(s) 402, 590, 641, 1176, 1214, 1299
BsaWI WCCGGW 2 cut(s) 42, 1411
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 5 cut(s) 67, 915, 1000, 1241, 1335
BseAI TCCGGA 2 cut(s) 42, 1411
BseBI CCWGG 3 cut(s) 88, 642, 1300
BseDI CCNNGG 6 cut(s) 402, 590, 641, 1176, 1214, 1299
BseMII CTCAG 3 cut(s) 315, 480, 1221
BseNI ACTGG 5 cut(s) 67, 915, 1000, 1241, 1335
BseRI GAGGAG 3 cut(s) 38, 657, 1067
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 3 cut(s) 1029, 1175, 1257
BshNI GGYRCC 2 cut(s) 72, 472
BsiSI CCGG 5 cut(s) 10, 43, 476, 936, 1412
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 3 cut(s) 669, 974, 1409
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 1094, 1187
BsnI GGCC 3 cut(s) 1029, 1175, 1257
Bso31I GGTCTC 1 cut(s) 974
Bsp1286I GDGCHC 2 cut(s) 110, 648
Bsp13I TCCGGA 2 cut(s) 42, 1411
Bsp143I GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
Bsp19I CCATGG 3 cut(s) 590, 1176, 1214
BspACI CCGC 3 cut(s) 76, 219, 312
BspANI GGCC 3 cut(s) 1029, 1175, 1257
BspCNI CTCAG 3 cut(s) 316, 481, 1222
BspEI TCCGGA 2 cut(s) 42, 1411
BspLI GGNNCC 7 cut(s) 74, 85, 171, 301, 474, 1351, 1410
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 3 cut(s) 112, 240, 1435
BspT107I GGYRCC 2 cut(s) 72, 472
BspTNI GGTCTC 1 cut(s) 974
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 5 cut(s) 67, 915, 1000, 1241, 1335
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 6 cut(s) 402, 590, 641, 1176, 1214, 1299
BssMI GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
BssT1I CCWWGG 4 cut(s) 402, 590, 1176, 1214
Bst2UI CCWGG 3 cut(s) 88, 642, 1300
Bst4CI ACNGT 5 cut(s) 247, 472, 899, 964, 1387
Bst6I CTCTTC 1 cut(s) 1431
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstC8I GCNNGC 7 cut(s) 110, 148, 310, 387, 564, 678, 1027
BstDEI CTNAG 4 cut(s) 324, 489, 884, 1230
BstDSI CCRYGG 3 cut(s) 590, 1176, 1214
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 6 cut(s) 40, 120, 235, 357, 1308, 1443
BstMAI GTCTC 3 cut(s) 669, 974, 1409
BstMBI GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
BstMWI GCNNNNNNNGC 6 cut(s) 75, 105, 494, 1022, 1146, 1280
BstNI CCWGG 3 cut(s) 88, 642, 1300
BstSCI CCNGG 5 cut(s) 9, 86, 640, 935, 1298
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 3 cut(s) 37, 232, 1440
BstXI CCANNNNNNTGG 2 cut(s) 103, 1366
BstYI RGATCY 3 cut(s) 37, 232, 1440
BsuI GTATCC 1 cut(s) 591
BsuRI GGCC 3 cut(s) 1029, 1175, 1257
BtgI CCRYGG 3 cut(s) 590, 1176, 1214
BtsI GCAGTG 1 cut(s) 1348
BtsIMutI CAGTG 4 cut(s) 60, 766, 1164, 1348
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 7 cut(s) 110, 148, 310, 387, 564, 678, 1027
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 2 cut(s) 170, 1449
CseI GACGC 1 cut(s) 139
Csp6I GTAC 3 cut(s) 73, 627, 918
CviAII CATG 8 cut(s) 79, 100, 424, 591, 1008, 1177, 1215, 1366
CviQI GTAC 3 cut(s) 73, 627, 918
DdeI CTNAG 4 cut(s) 324, 489, 884, 1230
DpnI GATC 6 cut(s) 39, 119, 234, 356, 1307, 1442
DpnII GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 1431
EarI CTCTTC 1 cut(s) 1431
Eco130I CCWWGG 4 cut(s) 402, 590, 1176, 1214
Eco147I AGGCCT 1 cut(s) 1257
Eco24I GRGCYC 2 cut(s) 110, 648
Eco31I GGTCTC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 170, 1449
Eco57I CTGAAG 1 cut(s) 1438
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 86, 640, 1298
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 4 cut(s) 402, 590, 1176, 1214
EcoT38I GRGCYC 2 cut(s) 110, 648
ErhI CCWWGG 4 cut(s) 402, 590, 1176, 1214
FaeI CATG 8 cut(s) 82, 103, 427, 594, 1011, 1180, 1218, 1369
FaqI GGGAC 1 cut(s) 26
FatI CATG 8 cut(s) 78, 99, 423, 590, 1007, 1176, 1214, 1365
FbaI TGATCA 1 cut(s) 1305
Fnu4HI GCNGC 1 cut(s) 360
FriOI GRGCYC 2 cut(s) 110, 648
Fsp4HI GCNGC 1 cut(s) 360
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 3 cut(s) 1029, 1175, 1257
HapII CCGG 5 cut(s) 10, 43, 476, 936, 1412
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 339
Hin1II CATG 8 cut(s) 82, 103, 427, 594, 1011, 1180, 1218, 1369
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 6 cut(s) 240, 407, 444, 662, 1124, 1234
HpaII CCGG 5 cut(s) 10, 43, 476, 936, 1412
HphI GGTGA 6 cut(s) 127, 181, 1315, 1348, 1375, 1384
Hpy166II GTNNAC 1 cut(s) 866
Hpy188I TCNGA 6 cut(s) 210, 253, 318, 325, 1231, 1457
Hpy188III TCNNGA 7 cut(s) 43, 154, 659, 769, 1309, 1412, 1433
Hpy8I GTNNAC 1 cut(s) 866
Hpy99I CGWCG 1 cut(s) 1035
HpyAV CCTTC 4 cut(s) 61, 423, 434, 1363
HpyCH4III ACNGT 5 cut(s) 247, 472, 899, 964, 1387
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 4 cut(s) 718, 815, 929, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 105, 494, 1022, 1146, 1280
HpyF3I CTNAG 4 cut(s) 324, 489, 884, 1230
HpySE526I ACGT 1 cut(s) 954
Hsp92II CATG 8 cut(s) 82, 103, 427, 594, 1011, 1180, 1218, 1369
HspAI GCGC 1 cut(s) 337
Kpn2I TCCGGA 2 cut(s) 42, 1411
KpnI GGTACC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 1305
Kzo9I GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
LmnI GCTCC 6 cut(s) 66, 134, 287, 299, 1205, 1338
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 791, 1158
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 3 cut(s) 544, 950, 1000
MalI GATC 6 cut(s) 39, 119, 234, 356, 1307, 1442
MboI GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
MboII GAAGA 7 cut(s) 402, 716, 843, 866, 936, 1229, 1448
MfeI CAATTG 2 cut(s) 549, 1285
MflI RGATCY 3 cut(s) 37, 232, 1440
MhlI GDGCHC 2 cut(s) 110, 648
MlsI TGGCCA 1 cut(s) 1175
MluCI AATT 8 cut(s) 179, 549, 804, 858, 891, 1068, 1182, 1285
MluNI TGGCCA 1 cut(s) 1175
MlyI GAGTC 2 cut(s) 234, 671
MmeI TCCRAC 5 cut(s) 233, 277, 417, 1039, 1144
Mox20I TGGCCA 1 cut(s) 1175
MroI TCCGGA 2 cut(s) 42, 1411
MroXI GAANNNNTTC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 6 cut(s) 350, 848, 894, 1220, 1245, 1251
MslI CAYNNNNRTG 3 cut(s) 1157, 1364, 1370
Msp20I TGGCCA 1 cut(s) 1175
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 5 cut(s) 10, 43, 476, 936, 1412
MspR9I CCNGG 5 cut(s) 11, 88, 642, 937, 1300
MunI CAATTG 2 cut(s) 549, 1285
Mva1269I GAATGC 2 cut(s) 1094, 1187
MvaI CCWGG 3 cut(s) 88, 642, 1300
MwoI GCNNNNNNNGC 6 cut(s) 75, 105, 494, 1022, 1146, 1280
NciI CCSGG 2 cut(s) 11, 937
NcoI CCATGG 3 cut(s) 590, 1176, 1214
NdeII GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
NlaIII CATG 8 cut(s) 82, 103, 427, 594, 1011, 1180, 1218, 1369
NlaIV GGNNCC 7 cut(s) 74, 85, 171, 301, 474, 1351, 1410
NmuCI GTSAC 1 cut(s) 1000
PaqCI CACCTGC 1 cut(s) 103
PceI AGGCCT 1 cut(s) 1257
PctI GAATGC 2 cut(s) 1094, 1187
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 4 cut(s) 407, 444, 1124, 1234
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 2 cut(s) 234, 670
PpsI GAGTC 2 cut(s) 234, 670
PpuMI RGGWCCY 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 3 cut(s) 86, 640, 1298
PspGI CCWGG 3 cut(s) 86, 640, 1298
PspN4I GGNNCC 7 cut(s) 74, 85, 171, 301, 474, 1351, 1410
PspPI GGNCC 2 cut(s) 170, 1449
PspPPI RGGWCCY 1 cut(s) 170
PsuI RGATCY 3 cut(s) 37, 232, 1440
RsaI GTAC 3 cut(s) 74, 628, 919
RsaNI GTAC 3 cut(s) 73, 627, 918
RseI CAYNNNNRTG 3 cut(s) 1157, 1364, 1370
SaqAI TTAA 6 cut(s) 350, 848, 894, 1220, 1245, 1251
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 6 cut(s) 37, 117, 232, 354, 1305, 1440
Sau96I GGNCC 2 cut(s) 170, 1449
SchI GAGTC 2 cut(s) 234, 671
ScrFI CCNGG 5 cut(s) 11, 88, 642, 937, 1300
SduI GDGCHC 2 cut(s) 110, 648
SfaNI GCATC 2 cut(s) 791, 1158
SinI GGWCC 2 cut(s) 170, 1449
SmiMI CAYNNNNRTG 3 cut(s) 1157, 1364, 1370
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 8 cut(s) 179, 549, 804, 858, 891, 1068, 1182, 1285
SseBI AGGCCT 1 cut(s) 1257
SsiI CCGC 3 cut(s) 76, 219, 312
SspI AATATT 3 cut(s) 618, 1132, 1249
StuI AGGCCT 1 cut(s) 1257
StyD4I CCNGG 5 cut(s) 9, 86, 640, 935, 1298
StyI CCWWGG 4 cut(s) 402, 590, 1176, 1214
TaaI ACNGT 5 cut(s) 247, 472, 899, 964, 1387
TaiI ACGT 1 cut(s) 957
TaqI TCGA 4 cut(s) 278, 670, 727, 1116
TasI AATT 8 cut(s) 179, 549, 804, 858, 891, 1068, 1182, 1285
TfiI GAWTC 4 cut(s) 407, 444, 1124, 1234
Tru1I TTAA 6 cut(s) 350, 848, 894, 1220, 1245, 1251
Tru9I TTAA 6 cut(s) 350, 848, 894, 1220, 1245, 1251
TscAI CASTG 4 cut(s) 67, 766, 1164, 1348
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 2 cut(s) 192, 643
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 4 cut(s) 67, 766, 1164, 1348
VpaK11BI GGWCC 2 cut(s) 170, 1449
XcmI CCANNNNNNNNNTGG 1 cut(s) 1366
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.