Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

39859073 .. 39859893

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATGGGTTCATCTCAAGTCATGAGGGATAGCTCCATTTCTATAGTCTCTTGTGTTCTGATTGTCGCTTTGGGTCCTATCCAATTAGGCTTCACTTTTGGATATTCTTCTCCGACTCAAGCAACAATCATCGTTGATCTTGGACTCTCAGTGTCAGAGTATTCTCTTTTTGGTTCTTTATCAAATATGGGTGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTAAGTATATTAGGCGCAAAGGGCTTGCCATATCATTTGCCAAAGTGAATTCTTCATTTCTCTACATGGGAAGGTTATTGGAAGGGTTTGGCGTGGGAATAATCTCGTATGTGGTTATGATCAGTTGTTCAATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

121

Amino Acids

12.75

Weight (kDa)

9.1

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	357
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	2 cut(s)	42, 207
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	75, 193
BpuEI	CTTGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	136, 345
Bsp19I	CCATGG	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	75, 193
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	136, 345
BssT1I	CCWWGG	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	148, 228
BstDSI	CCRYGG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	139, 348
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	136, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstSFI	CTRYAG	2 cut(s)	42, 207
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	156, 220
Cac8I	GCNNGC	1 cut(s)	252
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	3 cut(s)	22, 196, 292
CviJI	RGCY	5 cut(s)	33, 90, 206, 212, 250
CviKI_1	RGCY	5 cut(s)	33, 90, 206, 212, 250
DdeI	CTNAG	2 cut(s)	148, 228
DpnI	GATC	2 cut(s)	138, 347
DpnII	GATC	2 cut(s)	136, 345
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	25, 199, 295
FatI	CATG	3 cut(s)	21, 195, 291
FbaI	TGATCA	1 cut(s)	345
GlaI	GCGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	25, 199, 295
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	115, 144
Hpy188I	TCNGA	4 cut(s)	60, 114, 157, 222
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	291, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	148, 228
Hsp92II	CATG	3 cut(s)	25, 199, 295
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	136, 345
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	1 cut(s)	226
MalI	GATC	2 cut(s)	138, 347
MboI	GATC	2 cut(s)	136, 345
MboII	GAAGA	2 cut(s)	99, 270
MluCI	AATT	2 cut(s)	83, 274
MlyI	GAGTC	2 cut(s)	109, 138
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	136, 345
NlaIII	CATG	3 cut(s)	25, 199, 295
NlaIV	GGNNCC	2 cut(s)	75, 193
PagI	TCATGA	1 cut(s)	21
PleI	GAGTC	2 cut(s)	109, 138
PpsI	GAGTC	2 cut(s)	109, 138
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	75, 193
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	136, 345
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	109, 138
SetI	ASST	2 cut(s)	35, 302
SfcI	CTRYAG	2 cut(s)	42, 207
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	15, 117
SmoI	CTYRAG	2 cut(s)	15, 117
Sse9I	AATT	2 cut(s)	83, 274
StyI	CCWWGG	1 cut(s)	195
TasI	AATT	2 cut(s)	83, 274
TscAI	CASTG	2 cut(s)	156, 220
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	156, 220
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.