Rh7DG331600

Plant nuclear matrix protein 1 (NMP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001989
Physical Location & Seq
Forward (+)
40520562 .. 40522844
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG331600.1

Sequence Viewer

Length: 357 bp
ATGATGGGTTCGTCTCAGGTCATGAGGGATAGCTCCATTTCTGTAGTCGCTTGCGTTCTGATTGTCGCTTTGGGTCCTATCCAATTCGGCTTCACTTCTGGATATTCTTCTCCGACTCAAGCAGCAATCATCTTTGATCTTGGACTCTCAGTGCATGATGTTTCTGAGCTGCAGCAAAAGCTTACAGAACAATCAAAGATACTGTCAAATCTTCAACAAAAGGTTGATGATTTGGCATCAAAGCATGGTTACAGCCCAGATGAGGAGTATGCAGAGGTAGAATCCAGATTGCGTTCACATTTGGAATCTTTTCTAGAAACTACAAGATCATTCAATATGATTTACACCGAGGTCTGA

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

4.73

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_NMP1 PF06694 50 - 117 3.8e-25 Plant nuclear matrix protein 1 (NMP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 215, 334
AluBI AGCT 3 cut(s) 33, 169, 181
AluI AGCT 3 cut(s) 33, 169, 181
Alw26I GTCTC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 122, 169, 172
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 134, 156, 184
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 2 cut(s) 42, 170
BisI GCNGC 3 cut(s) 123, 170, 173
BlsI GCNGC 3 cut(s) 124, 171, 174
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 3 cut(s) 29, 156, 162
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 134, 156, 184
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 136, 326
BspCNI CTCAG 3 cut(s) 28, 157, 161
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 136, 326
Bst4CI ACNGT 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 3 cut(s) 15, 148, 165
BstKTI GATC 2 cut(s) 139, 329
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 136, 326
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 42, 170
BstV1I GCAGC 3 cut(s) 134, 156, 184
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 3 cut(s) 22, 155, 245
CviJI RGCY 5 cut(s) 33, 90, 169, 181, 255
CviKI_1 RGCY 5 cut(s) 33, 90, 169, 181, 255
DdeI CTNAG 3 cut(s) 15, 148, 165
DpnI GATC 2 cut(s) 138, 328
DpnII GATC 2 cut(s) 136, 326
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 3 cut(s) 25, 158, 248
FaiI YATR 5 cut(s) 23, 156, 246, 270, 338
FatI CATG 3 cut(s) 21, 154, 244
Fnu4HI GCNGC 3 cut(s) 123, 170, 173
Fsp4HI GCNGC 3 cut(s) 123, 170, 173
FspBI CTAG 1 cut(s) 314
GluI GCNGC 3 cut(s) 123, 170, 173
Hin1II CATG 3 cut(s) 25, 158, 248
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 4 cut(s) 115, 144, 281, 305
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 4 cut(s) 60, 114, 166, 356
Hpy188III TCNNGA 4 cut(s) 22, 99, 285, 314
Hpy8I GTNNAC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 154, 172, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 15, 148, 165
Hsp92II CATG 3 cut(s) 25, 158, 248
Kzo9I GATC 2 cut(s) 136, 326
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 2, 84, 270, 298
Lsp1109I GCAGC 3 cut(s) 134, 156, 184
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 138, 328
MboI GATC 2 cut(s) 136, 326
MboII GAAGA 2 cut(s) 99, 203
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 109, 138
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 4 cut(s) 18, 256, 268, 343
MroXI GAANNNNTTC 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 136, 326
NlaIII CATG 3 cut(s) 25, 158, 248
NlaIV GGNNCC 1 cut(s) 75
PagI TCATGA 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 281, 305
PkrI GCNGC 3 cut(s) 124, 171, 174
PleI GAGTC 2 cut(s) 109, 138
PpsI GAGTC 2 cut(s) 109, 138
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 1 cut(s) 174
SatI GCNGC 3 cut(s) 123, 170, 173
Sau3AI GATC 2 cut(s) 136, 326
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 109, 138
SetI ASST 7 cut(s) 21, 35, 171, 183, 225, 279, 354
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 2 cut(s) 42, 170
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 83
SspMI CTAG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 204
TasI AATT 1 cut(s) 83
TfiI GAWTC 2 cut(s) 281, 305
TscAI CASTG 1 cut(s) 156
TseI GCWGC 3 cut(s) 122, 169, 172
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.