Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

19811296 .. 19816398

Gene Structure 5103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATAGAGGAGGTCAAGAAGGCTTACAAGGCGGCTTTGAAGCTTTATCTAAGAATGACAACCAGTCCCCCAAGGCCACATGAATGGTATCAAGAAGCCCTAGAGGCACCGCCACACTTTCACCAACAGGATTTAGTACCCCCTGGGCGGTCGCCGAGGACCACGAGGAAGAGCGGGCTGGTAGTGGAGGAGATGGCTGCTGAAGAGGGTGGTGAGAGTGTGAGCGGCCGCTGGGTTTCAGGGAGGACAGTGGTGAAGAAGGGAGGGATCTCAGGAAGCCGTTCCTGCATACTGGGAGCTGGTACCAGATGGGTTCCAGGCAATCCATTTGGATATTCTTCTCCGACTCAAGCAGCAATCATCGCTGATCTTGGACTCTCAATGTCAAAAGTTATATATTCACAAAAGAAGAGCGGCGCCGTTTCGGCCGAAATTAAGACTAGTGAGCGAGTGGGGCTTATAGAGGAGGCTAAGAGCGGAAAGAAGAATGAGGTGCTTGTGGTTCCTTACGAATTCTTACACATGTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTCAATGGAGGTTTGGGTACAAATATTGGATTTGGTGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

9.19

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	302
AccB1I	GGYRCC	3 cut(s)	106, 302, 416
AccBSI	CCGCTC	4 cut(s)	174, 225, 414, 477
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	8 cut(s)	32, 110, 148, 174, 225, 229, 414, 477
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	226, 426
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	3 cut(s)	138, 304, 587
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	40, 572
AhdI	GACNNNNNGTC	1 cut(s)	63
AhlI	ACTAGT	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	142, 316
AluBI	AGCT	3 cut(s)	43, 299, 565
AluI	AGCT	3 cut(s)	43, 299, 565
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	4 cut(s)	74, 226, 426, 605
ApeKI	GCWGC	2 cut(s)	197, 353
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	159, 606
AsuHPI	GGTGA	3 cut(s)	113, 224, 265
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	3 cut(s)	106, 302, 416
BauI	CACGAG	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	184, 365
BccI	CCATC	2 cut(s)	187, 303
BceAI	ACGGC	2 cut(s)	264, 404
BciT130I	CCWGG	2 cut(s)	144, 318
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	101, 441
BfoI	RGCGCY	1 cut(s)	420
BglI	GCCNNNNNGGC	2 cut(s)	104, 425
BisI	GCNGC	6 cut(s)	33, 198, 226, 229, 354, 415
BlsI	GCNGC	6 cut(s)	34, 199, 227, 230, 355, 416
Bme1390I	CCNGG	2 cut(s)	144, 318
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	159, 606
BmiI	GGNNCC	5 cut(s)	108, 304, 315, 418, 504
BmrFI	CCNGG	2 cut(s)	144, 318
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	71, 142, 143, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	63, 297
BseBI	CCWGG	2 cut(s)	144, 318
BseDI	CCNNGG	4 cut(s)	71, 142, 143, 155
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	63, 297
BseRI	GAGGAG	4 cut(s)	23, 203, 479, 563
BseX3I	CGGCCG	2 cut(s)	226, 426
BseXI	GCAGC	2 cut(s)	184, 365
BseYI	CCCAGC	1 cut(s)	231
Bsh1285I	CGRYCG	3 cut(s)	152, 229, 429
BshFI	GGCC	4 cut(s)	76, 228, 428, 607
BshNI	GGYRCC	3 cut(s)	106, 302, 416
BsiEI	CGRYCG	3 cut(s)	152, 229, 429
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	4 cut(s)	76, 228, 428, 607
Bsp143I	GATC	2 cut(s)	267, 367
BspACI	CCGC	8 cut(s)	32, 110, 148, 174, 225, 229, 414, 477
BspANI	GGCC	4 cut(s)	76, 228, 428, 607
BspCNI	CTCAG	1 cut(s)	284
BspLI	GGNNCC	5 cut(s)	108, 304, 315, 418, 504
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	2 cut(s)	164, 404
BspT107I	GGYRCC	3 cut(s)	106, 302, 416
BsrBI	CCGCTC	4 cut(s)	174, 225, 414, 477
BsrI	ACTGG	2 cut(s)	63, 297
BssECI	CCNNGG	4 cut(s)	71, 142, 143, 155
BssMI	GATC	2 cut(s)	267, 367
BssNI	GRCGYC	1 cut(s)	417
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	144, 318
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	3 cut(s)	164, 198, 404
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	50, 271, 471
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	270, 370
BstMBI	GATC	2 cut(s)	267, 367
BstMCI	CGRYCG	3 cut(s)	152, 229, 429
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 104, 285, 362, 425, 454, 562
BstNI	CCWGG	2 cut(s)	144, 318
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	142, 316
BstV1I	GCAGC	2 cut(s)	184, 365
BstX2I	RGATCY	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	2 cut(s)	226, 426
BsuRI	GGCC	4 cut(s)	76, 228, 428, 607
BtgZI	GCGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	176
CciNI	GCGGCCGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	159, 606
Csp6I	GTAC	3 cut(s)	137, 303, 586
CviAII	CATG	2 cut(s)	80, 523
CviQI	GTAC	3 cut(s)	137, 303, 586
DdeI	CTNAG	3 cut(s)	50, 271, 471
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	2 cut(s)	269, 369
DpnII	GATC	2 cut(s)	267, 367
DriI	GACNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	2 cut(s)	226, 426
EagI	CGGCCG	2 cut(s)	226, 426
Eam1104I	CTCTTC	3 cut(s)	164, 198, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	3 cut(s)	164, 198, 404
EclXI	CGGCCG	2 cut(s)	226, 426
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	159
Eco52I	CGGCCG	2 cut(s)	226, 426
Eco57I	CTGAAG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	142, 316
EcoT14I	CCWWGG	1 cut(s)	71
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	83, 526
FaiI	YATR	6 cut(s)	81, 290, 395, 397, 461, 524
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	79, 522
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	6 cut(s)	33, 198, 226, 229, 354, 415
Fsp4HI	GCNGC	6 cut(s)	33, 198, 226, 229, 354, 415
FspBI	CTAG	2 cut(s)	101, 441
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	6 cut(s)	33, 198, 226, 229, 354, 415
GsaI	CCCAGC	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	76, 228, 428, 607
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	83, 526
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	41, 563
HinfI	GANTC	2 cut(s)	346, 375
HphI	GGTGA	3 cut(s)	113, 224, 265
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	3 cut(s)	16, 92, 273
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	13, 253
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 104, 285, 362, 425, 454, 562
HpyF3I	CTNAG	3 cut(s)	50, 271, 471
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	83, 526
HspAI	GCGC	1 cut(s)	417
KasI	GGCGCC	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	267, 367
LguI	GCTCTTC	2 cut(s)	164, 404
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	184, 365
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	101, 441
MalI	GATC	2 cut(s)	269, 369
MbiI	CCGCTC	4 cut(s)	174, 225, 414, 477
MboI	GATC	2 cut(s)	267, 367
MboII	GAAGA	6 cut(s)	181, 215, 268, 330, 421, 496
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	3 cut(s)	432, 512, 543
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	340, 369
MmeI	TCCRAC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	280
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	144, 318
MvaI	CCWGG	2 cut(s)	144, 318
MwoI	GCNNNNNNNGC	7 cut(s)	29, 104, 285, 362, 425, 454, 562
NarI	GGCGCC	1 cut(s)	417
NdeII	GATC	2 cut(s)	267, 367
NlaIII	CATG	2 cut(s)	83, 526
NlaIV	GGNNCC	5 cut(s)	108, 304, 315, 418, 504
NmeAIII	GCCGAG	1 cut(s)	180
NotI	GCGGCCGC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	526
PasI	CCCWGGG	1 cut(s)	143
PciI	ACATGT	1 cut(s)	522
PciSI	GCTCTTC	2 cut(s)	164, 404
PdmI	GAANNNNTTC	1 cut(s)	280
PkrI	GCNGC	6 cut(s)	34, 199, 227, 230, 355, 416
PleI	GAGTC	2 cut(s)	340, 369
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	2 cut(s)	340, 369
PscI	ACATGT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	142, 316
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	2 cut(s)	142, 316
PspN4I	GGNNCC	5 cut(s)	108, 304, 315, 418, 504
PspPI	GGNCC	2 cut(s)	159, 606
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	3 cut(s)	138, 304, 587
RsaNI	GTAC	3 cut(s)	137, 303, 586
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	2 cut(s)	164, 404
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	6 cut(s)	33, 198, 226, 229, 354, 415
Sau3AI	GATC	2 cut(s)	267, 367
Sau96I	GGNCC	2 cut(s)	159, 606
SchI	GAGTC	2 cut(s)	340, 369
ScrFI	CCNGG	2 cut(s)	144, 318
SetI	ASST	6 cut(s)	15, 45, 301, 495, 567, 581
SfaNI	GCATC	1 cut(s)	543
SfoI	GGCGCC	1 cut(s)	418
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	3 cut(s)	432, 512, 543
SsiI	CCGC	8 cut(s)	32, 110, 148, 174, 225, 229, 414, 477
SspDI	GGCGCC	1 cut(s)	416
SspI	AATATT	1 cut(s)	593
SspMI	CTAG	2 cut(s)	101, 441
StyD4I	CCNGG	2 cut(s)	142, 316
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	250
TasI	AATT	3 cut(s)	432, 512, 543
TauI	GCSGC	4 cut(s)	35, 228, 231, 417
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	197, 353
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	512
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	101, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.