Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

49017948 .. 49019874

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACTTGGGTTTTCATGGAATTACGTTATCCTCCACTTCTGGTGCTTGAAGATTTAGTACCCCTTGGGCGGTCGCTGATGACCACGAGGAAGAGCGGGCTGGCAGTGGAGGAGATGGCGGCCGAAGAGGGTGGTAAGAGTGCGAGCGGCCGCTGGGTTTCATGGAGGACAGTGGTGAAGAAGGGAGGGATCTCAGGAAGCCATTCCTGCATACTGGGACCGGATGGGTTCCAGGCAATCCAGTATGATGGTTTGGATATTCTTGTCCAACTCAAGCAGCAATCATCGCTGATCTTGGACTCTCAATGTCAAAAGTTATATATTCACAACAAGAAGAAGAGCGGCGCCGTTTCGGCCGAAATTGAGACTAGTGAGCGAGTGGGGCTTCTAGAGGAAGCTAAGAGCGGAAAGAAGAATGAGGTGCTTGTGGTTCCTTACGAATTCTTACACATGTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGGCAAGCTTGTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

168

Amino Acids

18.5

Weight (kDa)

5.96

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccBSI	CCGCTC	4 cut(s)	96, 147, 342, 405
AccI	GTMKAC	1 cut(s)	455
AciI	CCGC	7 cut(s)	70, 96, 119, 147, 151, 342, 405
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	3 cut(s)	120, 148, 354
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	50, 500
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	398, 493
AluI	AGCT	2 cut(s)	398, 493
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	120, 148, 354
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	109, 218, 242
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 389
BfoI	RGCGCY	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	120, 148, 151, 278, 343
BlsI	GCNGC	5 cut(s)	121, 149, 152, 279, 344
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	4 cut(s)	219, 230, 346, 432
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	219, 241
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	219, 241
BseRI	GAGGAG	2 cut(s)	125, 491
BseX3I	CGGCCG	3 cut(s)	120, 148, 354
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	153, 484
Bsh1285I	CGRYCG	4 cut(s)	74, 123, 151, 357
BshFI	GGCC	3 cut(s)	122, 150, 356
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	4 cut(s)	74, 123, 151, 357
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	122, 150, 356
Bsp143I	GATC	2 cut(s)	189, 291
BspACI	CCGC	7 cut(s)	70, 96, 119, 147, 151, 342, 405
BspANI	GGCC	3 cut(s)	122, 150, 356
BspCNI	CTCAG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	219, 230, 346, 432
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	2 cut(s)	86, 332
BspT107I	GGYRCC	1 cut(s)	344
BsrBI	CCGCTC	4 cut(s)	96, 147, 342, 405
BsrI	ACTGG	2 cut(s)	219, 241
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	189, 291
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	3 cut(s)	86, 120, 332
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	98, 102, 145, 491
BstDEI	CTNAG	2 cut(s)	193, 399
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	2 cut(s)	192, 294
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	2 cut(s)	189, 291
BstMCI	CGRYCG	4 cut(s)	74, 123, 151, 357
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 286, 353, 382, 490
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	189
BstZI	CGGCCG	3 cut(s)	120, 148, 354
BsuRI	GGCC	3 cut(s)	122, 150, 356
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 177
Cac8I	GCNNGC	4 cut(s)	98, 102, 145, 491
CciNI	GCGGCCGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	3 cut(s)	16, 162, 451
CviJI	RGCY	8 cut(s)	100, 122, 150, 201, 356, 385, 398, 493
CviKI_1	RGCY	8 cut(s)	100, 122, 150, 201, 356, 385, 398, 493
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	193, 399
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	2 cut(s)	191, 293
DpnII	GATC	2 cut(s)	189, 291
EaeI	YGGCCR	3 cut(s)	120, 148, 354
EagI	CGGCCG	3 cut(s)	120, 148, 354
Eam1104I	CTCTTC	3 cut(s)	86, 120, 332
EarI	CTCTTC	3 cut(s)	86, 120, 332
EclXI	CGGCCG	3 cut(s)	120, 148, 354
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	218
Eco52I	CGGCCG	3 cut(s)	120, 148, 354
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	19, 165, 454
FaiI	YATR	7 cut(s)	17, 163, 212, 246, 319, 321, 452
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	15, 161, 450
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	5 cut(s)	120, 148, 151, 278, 343
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	5 cut(s)	120, 148, 151, 278, 343
FspBI	CTAG	2 cut(s)	369, 389
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	5 cut(s)	120, 148, 151, 278, 343
GsaI	CCCAGC	2 cut(s)	157, 488
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	122, 150, 356
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	19, 165, 454
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	195, 389
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 286, 353, 382, 490
HpyF3I	CTNAG	2 cut(s)	193, 399
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	19, 165, 454
HspAI	GCGC	1 cut(s)	345
KasI	GGCGCC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	189, 291
LguI	GCTCTTC	2 cut(s)	86, 332
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	2 cut(s)	369, 389
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	191, 293
MbiI	CCGCTC	4 cut(s)	96, 147, 342, 405
MboI	GATC	2 cut(s)	189, 291
MboII	GAAGA	7 cut(s)	62, 103, 137, 190, 346, 349, 424
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	4 cut(s)	20, 360, 440, 471
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	9 cut(s)	42, 81, 103, 121, 159, 179, 385, 412, 469
MroXI	GAANNNNTTC	1 cut(s)	202
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	207, 286, 353, 382, 490
NarI	GGCGCC	1 cut(s)	345
NdeII	GATC	2 cut(s)	189, 291
NlaIII	CATG	3 cut(s)	19, 165, 454
NlaIV	GGNNCC	4 cut(s)	219, 230, 346, 432
NotI	GCGGCCGC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	454
PciI	ACATGT	1 cut(s)	450
PciSI	GCTCTTC	2 cut(s)	86, 332
PdmI	GAANNNNTTC	1 cut(s)	202
PkrI	GCNGC	5 cut(s)	121, 149, 152, 279, 344
PleI	GAGTC	1 cut(s)	293
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	293
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	2 cut(s)	153, 484
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	219, 230, 346, 432
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	86, 332
SatI	GCNGC	5 cut(s)	120, 148, 151, 278, 343
Sau3AI	GATC	2 cut(s)	189, 291
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	4 cut(s)	28, 400, 423, 495
SfaNI	GCATC	1 cut(s)	471
SfoI	GGCGCC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	4 cut(s)	20, 360, 440, 471
SsiI	CCGC	7 cut(s)	70, 96, 119, 147, 151, 342, 405
SspDI	GGCGCC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	369, 389
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	28
TasI	AATT	4 cut(s)	20, 360, 440, 471
TauI	GCSGC	4 cut(s)	122, 150, 153, 345
TscAI	CASTG	2 cut(s)	111, 177
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	4, 150
TspRI	CASTG	2 cut(s)	111, 177
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	2 cut(s)	369, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.