Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

64507277 .. 64512014

Gene Structure 4738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGTTTCAGGGAGGACAGTGGTGAAGAAGGGAGGGATCTCAGGAAGCCCTTCCTGCATACTGGGAGCTGGTACCGTATGGGTTCCAGGCAATCCAGTATGATGGGTTCGTCTCAGGTCATGAGGGATAGCTCCATTTCTGTAGTGGCTTGTGTTCTGATTGTGGCCTTGGGTCCTATCCAATTCGGCTTCACTTCTGGGTATTCTTCTCCGACTCAAGCAGCAATCACCGCTGATCTTGGACTCTCACTGTCAGAGTATTCTCTTTTTGGTTCTTTATCAAATGTGGGCGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCGCCATTCCTAATGTCATCGGCTGGCTTGCCATATCATTTGCCAAAGATTCTTCATTTCTCTACATGGGAAGGTTGTTGGAAGGGTTTGGCGTGGGAATAATCTCGTACGTGGTGCCCGTATATATTGCAGAGATAGCGCCTCAAAATTTGAGAGGCTCTTTGGGTGCAGTCAATCAGCTCTCCGTAACCATTGGGATAATGCTGGCTTATGTGCTTGGACTTTTTGTTCAATGGAGATATCTTGCAGTTTTGGGAATATTGCCTTGTACGATATTGATACCTGGGCTGTTTTTCATTCCAGAATCACCTCGATGGCTGGCAAAAATGGGTATGACAGACGATTTTGAAGCCTCTTTGCAAGTTCTACGGGGATTTGATACTGATATTTCCATTGAAGTGAATGAGATAAAGAGGTCTGTGGCATCAACAACCAGAAGAACAACAATAAGGTTTGCAGAACTCAAACAAAGAAGATACTGGCTTCCTTTAATGATTGGAATTGGATTACTTGTTCTTCAACAGCTTAGTGGAATTAACGGCGTTCTATTCTATTCCAGTACCATCTTTGAAACTGCTGGGATTACATCAAGTAATGCAGCCACATGTGGCCTTGGTGCTGTTCAGGTCATAGCAACTGGTGTGAGTACCTGGTTGATGGACAAAGCAGGCCGTCGACTTCTGCTTATTATCTCCTCCGCTGGAATGACAGTTAGCCTCCTAGTTGTGGCTGTAGCATTTTATCTAAAGGTACTAAATCTCTCATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

377

Amino Acids

40.6

Weight (kDa)

9.03

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	52 - 368	4.9e-72	Sugar (and other) transporter
MFS_1	PF07690	62 - 368	2.7e-23	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	3 cut(s)	72, 290, 475
AccI	GTMKAC	1 cut(s)	1036
AciI	CCGC	3 cut(s)	231, 363, 1059
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	6 cut(s)	74, 470, 631, 922, 1009, 1113
AfiI	CCNNNNNNNGG	2 cut(s)	300, 1087
AflIII	ACRYGT	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	593, 710, 758, 881, 932
AjnI	CCWGG	3 cut(s)	86, 643, 1010
AloI	GAACNNNNNNTCC	4 cut(s)	573, 605, 858, 890
AluBI	AGCT	4 cut(s)	69, 132, 541, 886
AluI	AGCT	4 cut(s)	69, 132, 541, 886
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	165, 970, 1030
ApeKI	GCWGC	2 cut(s)	221, 959
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	72
AspLEI	GCGC	3 cut(s)	293, 342, 502
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	35, 220, 660
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	480
BanI	GGYRCC	3 cut(s)	72, 290, 475
BbvI	GCAGC	2 cut(s)	233, 971
BccI	CCATC	4 cut(s)	97, 669, 932, 1012
BceAI	ACGGC	2 cut(s)	916, 1017
BciT130I	CCWGG	3 cut(s)	88, 645, 1012
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	1082
BfmI	CTRYAG	3 cut(s)	141, 306, 1092
BfoI	RGCGCY	2 cut(s)	294, 503
BisI	GCNGC	3 cut(s)	222, 363, 960
BlsI	GCNGC	3 cut(s)	223, 364, 961
Bme1390I	CCNGG	3 cut(s)	88, 645, 1012
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
BmrFI	CCNGG	3 cut(s)	88, 645, 1012
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	4 cut(s)	168, 294, 644, 973
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 1087
Bse1I	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BseBI	CCWGG	3 cut(s)	88, 645, 1012
BseDI	CCNNGG	4 cut(s)	168, 294, 644, 973
BseLI	CCNNNNNNNGG	2 cut(s)	300, 1087
BseMII	CTCAG	3 cut(s)	55, 128, 318
BseNI	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BseRI	GAGGAG	1 cut(s)	1045
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	233, 971
BseYI	CCCAGC	1 cut(s)	938
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	167, 972, 1032
BshNI	GGYRCC	3 cut(s)	72, 290, 475
BsiWI	CGTACG	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	300, 1087
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	3 cut(s)	167, 972, 1032
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	37, 235, 357
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	3 cut(s)	231, 363, 1059
BspANI	GGCC	3 cut(s)	167, 972, 1032
BspCNI	CTCAG	3 cut(s)	54, 127, 319
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	3 cut(s)	72, 290, 475
BsrI	ACTGG	6 cut(s)	67, 96, 312, 845, 918, 1003
BssECI	CCNNGG	4 cut(s)	168, 294, 644, 973
BssMI	GATC	3 cut(s)	37, 235, 357
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	3 cut(s)	168, 294, 973
Bst2UI	CCWGG	3 cut(s)	88, 645, 1012
Bst4CI	ACNGT	4 cut(s)	20, 77, 252, 1072
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	5 cut(s)	386, 390, 567, 681, 1030
BstDEI	CTNAG	4 cut(s)	41, 114, 327, 887
BstDSI	CCRYGG	1 cut(s)	294
BstH2I	RGCGCY	2 cut(s)	294, 503
BstHHI	GCGC	3 cut(s)	293, 342, 502
BstKTI	GATC	3 cut(s)	40, 238, 360
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	37, 235, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
BstNI	CCWGG	3 cut(s)	88, 645, 1012
BstNSI	RCATGY	1 cut(s)	969
BstSCI	CCNGG	3 cut(s)	86, 643, 1010
BstSFI	CTRYAG	3 cut(s)	141, 306, 1092
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	233, 971
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	167, 972, 1032
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	3 cut(s)	25, 248, 319
Cac8I	GCNNGC	5 cut(s)	386, 390, 567, 681, 1030
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	3 cut(s)	293, 342, 502
Cfr13I	GGNCC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	1010
Csp6I	GTAC	6 cut(s)	73, 469, 630, 921, 1008, 1112
CviAII	CATG	5 cut(s)	121, 295, 427, 966, 1125
CviQI	GTAC	6 cut(s)	73, 469, 630, 921, 1008, 1112
DdeI	CTNAG	4 cut(s)	41, 114, 327, 887
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	3 cut(s)	39, 237, 359
DpnII	GATC	3 cut(s)	37, 235, 357
Eco130I	CCWWGG	3 cut(s)	168, 294, 973
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	86, 643, 1010
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	3 cut(s)	168, 294, 973
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	3 cut(s)	168, 294, 973
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	5 cut(s)	124, 298, 430, 969, 1128
FatI	CATG	5 cut(s)	120, 294, 426, 965, 1124
FblI	GTMKAC	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	222, 363, 960
Fsp4HI	GCNGC	3 cut(s)	222, 363, 960
FspBI	CTAG	1 cut(s)	1082
GlaI	GCGC	3 cut(s)	292, 341, 501
GluI	GCNGC	3 cut(s)	222, 363, 960
GsaI	CCCAGC	1 cut(s)	942
HaeII	RGCGCY	2 cut(s)	294, 503
HaeIII	GGCC	3 cut(s)	167, 972, 1032
HhaI	GCGC	3 cut(s)	293, 342, 502
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	124, 298, 430, 969, 1128
Hin6I	GCGC	3 cut(s)	291, 340, 500
HinP1I	GCGC	3 cut(s)	291, 340, 500
HincII	GTYRAC	1 cut(s)	1037
HindII	GTYRAC	1 cut(s)	1037
HinfI	GANTC	4 cut(s)	214, 243, 410, 665
HphI	GGTGA	3 cut(s)	35, 220, 660
Hpy166II	GTNNAC	1 cut(s)	1037
Hpy188I	TCNGA	5 cut(s)	159, 213, 256, 321, 328
Hpy188III	TCNNGA	3 cut(s)	43, 121, 662
Hpy8I	GTNNAC	1 cut(s)	1037
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	4 cut(s)	23, 61, 426, 437
HpyCH4III	ACNGT	4 cut(s)	20, 77, 252, 1072
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	7 cut(s)	58, 491, 530, 608, 721, 818, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
HpyF3I	CTNAG	4 cut(s)	41, 114, 327, 887
HpySE526I	ACGT	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	124, 298, 430, 969, 1128
HspAI	GCGC	3 cut(s)	291, 340, 500
KasI	GGCGCC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	37, 235, 357
LmnI	GCTCC	2 cut(s)	66, 137
Lsp1109I	GCAGC	2 cut(s)	233, 971
LweI	GCATC	1 cut(s)	794
MabI	ACCWGGT	1 cut(s)	1010
MaeI	CTAG	1 cut(s)	1082
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	39, 237, 359
MboI	GATC	3 cut(s)	37, 235, 357
MboII	GAAGA	6 cut(s)	38, 198, 405, 810, 846, 869
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	4 cut(s)	182, 508, 861, 894
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	208, 237
MmeI	TCCRAC	2 cut(s)	236, 420
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	3 cut(s)	353, 851, 897
MslI	CAYNNNNRTG	2 cut(s)	673, 758
MspA1I	CMGCKG	2 cut(s)	233, 1061
MspR9I	CCNGG	3 cut(s)	88, 645, 1012
MvaI	CCWGG	3 cut(s)	88, 645, 1012
MwoI	GCNNNNNNNGC	3 cut(s)	55, 230, 497
NarI	GGCGCC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	3 cut(s)	37, 235, 357
NlaIII	CATG	5 cut(s)	124, 298, 430, 969, 1128
NlaIV	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
NspI	RCATGY	1 cut(s)	969
PagI	TCATGA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	965
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	410, 665
Pfl23II	CGTACG	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	223, 364, 961
PleI	GAGTC	2 cut(s)	208, 237
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	208, 237
Ppu21I	YACGTR	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	173
PscI	ACATGT	1 cut(s)	965
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	86, 643, 1010
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	3 cut(s)	86, 643, 1010
PspLI	CGTACG	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	74, 85, 174, 292, 477
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	6 cut(s)	74, 470, 631, 922, 1009, 1113
RsaNI	GTAC	6 cut(s)	73, 469, 630, 921, 1008, 1112
RseI	CAYNNNNRTG	2 cut(s)	673, 758
SalI	GTCGAC	1 cut(s)	1035
SaqAI	TTAA	3 cut(s)	353, 851, 897
SatI	GCNGC	3 cut(s)	222, 363, 960
Sau3AI	GATC	3 cut(s)	37, 235, 357
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	208, 237
ScrFI	CCNGG	3 cut(s)	88, 645, 1012
SduI	GDGCHC	1 cut(s)	480
SexAI	ACCWGGT	1 cut(s)	1010
SfaNI	GCATC	1 cut(s)	794
SfcI	CTRYAG	3 cut(s)	141, 306, 1092
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	673, 758
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	4 cut(s)	182, 508, 861, 894
SsiI	CCGC	3 cut(s)	231, 363, 1059
SspDI	GGCGCC	1 cut(s)	290
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	1082
StyD4I	CCNGG	3 cut(s)	86, 643, 1010
StyI	CCWWGG	3 cut(s)	168, 294, 973
TaaI	ACNGT	4 cut(s)	20, 77, 252, 1072
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	673, 1036
TasI	AATT	4 cut(s)	182, 508, 861, 894
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	410, 665
Tru1I	TTAA	3 cut(s)	353, 851, 897
Tru9I	TTAA	3 cut(s)	353, 851, 897
TscAI	CASTG	3 cut(s)	25, 255, 319
TseI	GCWGC	2 cut(s)	221, 959
TspDTI	ATGAA	2 cut(s)	405, 646
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	3 cut(s)	25, 255, 319
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	1036
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.