Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

69796927 .. 69797748

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTCCAGGCAATCCAGTATGATGGGTTTGTCTCAGGTCATGAGGGATAGCTCTATTTCTGTAGTCGCTTGTGTTCAGATTGTCGCTTTGGGTCCTATCCAATCCGGCTTCACTTCTGGATATTCTTCTCCCACTCAAGCAGCAATCATCGTTGATCTTGGACTCTCATATTCTCTTTTTGGTTCTTTATCAAATGCGGGTGCCGTAGTGGGGGCTATAGCCAGGGGTCAGATTTTTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCACCATTCCTAATGTCATCGATTCTTCATTTCTCTACATGGGAAGGTTGTTGGAAGGGTTTGGTGTGGTAATGATCAGTTGTTCAATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

122

Amino Acids

12.7

Weight (kDa)

7.78

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	8, 224
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	10, 226
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	63, 219
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	10, 226
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	7, 96, 205
BmrFI	CCNGG	2 cut(s)	10, 226
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	10, 226
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	157, 270, 348
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	7, 96, 205
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	157, 270, 348
Bst2UI	CCWGG	2 cut(s)	10, 226
BstDEI	CTNAG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	3 cut(s)	160, 273, 351
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	157, 270, 348
BstNI	CCWGG	2 cut(s)	10, 226
BstSCI	CCNGG	2 cut(s)	8, 224
BstSFI	CTRYAG	2 cut(s)	63, 219
BstV1I	GCAGC	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	294
CviAII	CATG	2 cut(s)	43, 313
CviJI	RGCY	4 cut(s)	54, 111, 218, 224
CviKI_1	RGCY	4 cut(s)	54, 111, 218, 224
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	159, 272, 350
DpnII	GATC	3 cut(s)	157, 270, 348
Eco47I	GGWCC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	8, 224
FaeI	CATG	2 cut(s)	46, 316
FaiI	YATR	6 cut(s)	23, 44, 172, 221, 246, 314
FatI	CATG	2 cut(s)	42, 312
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	46, 316
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	165, 296
HpaII	CCGG	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	81, 234
Hpy188III	TCNNGA	2 cut(s)	43, 120
HpyAV	CCTTC	2 cut(s)	312, 323
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	46, 316
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	157, 270, 348
LpnPI	CCDG	7 cut(s)	22, 23, 31, 105, 121, 211, 238
Lsp1109I	GCAGC	1 cut(s)	155
MalI	GATC	3 cut(s)	159, 272, 350
MboI	GATC	3 cut(s)	157, 270, 348
MboII	GAAGA	2 cut(s)	120, 291
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	266
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	10, 226
MvaI	CCWGG	2 cut(s)	10, 226
NdeII	GATC	3 cut(s)	157, 270, 348
NlaIII	CATG	2 cut(s)	46, 316
NlaIV	GGNNCC	3 cut(s)	7, 96, 205
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	8, 224
PspGI	CCWGG	2 cut(s)	8, 224
PspN4I	GGNNCC	3 cut(s)	7, 96, 205
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	157, 270, 348
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	10, 226
SetI	ASST	3 cut(s)	42, 56, 323
SfcI	CTRYAG	2 cut(s)	63, 219
SinI	GGWCC	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SsiI	CCGC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	8, 224
TaqI	TCGA	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.