Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

43196609 .. 43200967

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGCCGAAGAGGGTGGTGAGAGTGCGAGCGGCCGCCGGGTTTCGGGGAGGACGGTGGTGAAGAAGGGAGGGATCTCGGGAAGCCGTTCTGCATCTTGGGAGCTGGTACGGGATGGGTTCCGAGCAATCCGCAAGAAGAAGAGCGGCGCCTTTTCGGCCAAAATTGAGACTAGTGAGCGAGTGGGGCTTATAGAGGAGGCTAAGAGCGGAAAGAAGAATGAGGTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTTGGTCAACAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTGTTAATCAAATGAGGGCAATGATTTGGGAAGTGATGCCTTTGGGCAACCTTATTACTGCAACTACTTGGGAGGGTGCTACTAATAAGCCTCGGGAACTAGATGACGCGTTGACTGCGGGGAGGTTGCGGGGAGAGACAATGCAGCGAGGTAGGAGAAGATCTGAGACTACTCCTGAGCTGGACAAGCACAATAACCAGCTAGGTTGGGTTCGTTATGTTGTTCAAGTGCTTTTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00500 ko00520 ko01100 ko01130 ko03010 map00040 map00052 map00500 map00520 map01100 map01130 map03010

Pfam Domains

Protein Families

Ribosomal_S2 UDPGP

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

9.64

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccBSI	CCGCTC	3 cut(s)	33, 147, 210
AccII	CGCG	1 cut(s)	419
AciI	CCGC	8 cut(s)	5, 33, 37, 133, 147, 210, 428, 439
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	3 cut(s)	6, 34, 159
AcsI	RAATTY	2 cut(s)	245, 279
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	536
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	3 cut(s)	106, 490, 511
AluI	AGCT	3 cut(s)	106, 490, 511
Alw26I	GTCTC	3 cut(s)	164, 440, 470
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	2 cut(s)	79, 402
AoxI	GGCC	3 cut(s)	6, 34, 159
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	2 cut(s)	245, 279
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	32, 73
AvaI	CYCGRG	2 cut(s)	79, 402
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	2 cut(s)	110, 281
BceAI	ACGGC	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	164, 440, 470
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	3 cut(s)	174, 410, 512
BfoI	RGCGCY	1 cut(s)	153
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	5 cut(s)	6, 34, 37, 148, 455
BlsI	GCNGC	5 cut(s)	7, 35, 38, 149, 456
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	79, 402
BmiI	GGNNCC	3 cut(s)	122, 151, 237
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	104, 336
Bpu10I	CCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	465, 477
BseRI	GAGGAG	1 cut(s)	212
BseX3I	CGGCCG	2 cut(s)	6, 34
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	419
Bsh1285I	CGRYCG	2 cut(s)	9, 37
BshFI	GGCC	3 cut(s)	8, 36, 161
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	2 cut(s)	9, 37
BsiHKCI	CYCGRG	2 cut(s)	79, 402
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	3 cut(s)	164, 440, 470
BsnI	GGCC	3 cut(s)	8, 36, 161
BsoBI	CYCGRG	2 cut(s)	79, 402
Bsp143I	GATC	2 cut(s)	75, 470
BspACI	CCGC	8 cut(s)	5, 33, 37, 133, 147, 210, 428, 439
BspANI	GGCC	3 cut(s)	8, 36, 161
BspCNI	CTCAG	2 cut(s)	466, 478
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	122, 151, 237
BspPI	GGATC	1 cut(s)	83
BspQI	GCTCTTC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	149
BsrBI	CCGCTC	3 cut(s)	33, 147, 210
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	75, 470
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	6, 137
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	204, 474, 486
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	78, 473
BstMAI	GTCTC	3 cut(s)	164, 440, 470
BstMBI	GATC	2 cut(s)	75, 470
BstMCI	CGRYCG	2 cut(s)	9, 37
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 187, 425, 496
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	75, 470
BstYI	RGATCY	2 cut(s)	75, 470
BstZI	CGGCCG	2 cut(s)	6, 34
BsuRI	GGCC	3 cut(s)	8, 36, 161
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	31
CciNI	GCGGCCGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	110
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	3 cut(s)	204, 474, 486
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	2 cut(s)	77, 472
DpnII	GATC	2 cut(s)	75, 470
EaeI	YGGCCR	3 cut(s)	6, 34, 159
EagI	CGGCCG	2 cut(s)	6, 34
Eam1104I	CTCTTC	2 cut(s)	6, 137
EarI	CTCTTC	2 cut(s)	6, 137
EclXI	CGGCCG	2 cut(s)	6, 34
Eco52I	CGGCCG	2 cut(s)	6, 34
Eco88I	CYCGRG	2 cut(s)	79, 402
EcoRI	GAATTC	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
FaiI	YATR	2 cut(s)	194, 528
FauI	CCCGC	2 cut(s)	421, 432
Fnu4HI	GCNGC	5 cut(s)	6, 34, 37, 148, 455
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	5 cut(s)	6, 34, 37, 148, 455
FspBI	CTAG	3 cut(s)	174, 410, 512
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	6, 34, 37, 148, 455
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	8, 36, 161
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	3 cut(s)	270, 294, 423
HindII	GTYRAC	3 cut(s)	270, 294, 423
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	2 cut(s)	32, 73
Hpy166II	GTNNAC	3 cut(s)	270, 294, 423
Hpy188I	TCNGA	2 cut(s)	125, 475
Hpy188III	TCNNGA	4 cut(s)	81, 302, 404, 485
Hpy8I	GTNNAC	3 cut(s)	270, 294, 423
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	95, 371, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 187, 425, 496
HpyF3I	CTNAG	3 cut(s)	204, 474, 486
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	1 cut(s)	150
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	75, 470
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	5 cut(s)	53, 92, 476, 498, 521
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	2 cut(s)	104, 336
MaeI	CTAG	3 cut(s)	174, 410, 512
MalI	GATC	2 cut(s)	77, 472
MbiI	CCGCTC	3 cut(s)	33, 147, 210
MboI	GATC	2 cut(s)	75, 470
MboII	GAAGA	6 cut(s)	23, 76, 151, 154, 229, 480
MflI	RGATCY	2 cut(s)	75, 470
MluCI	AATT	4 cut(s)	165, 245, 279, 309
MluI	ACGCGT	1 cut(s)	417
Mly113I	GGCGCC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	308, 315
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	41
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	158, 187, 425, 496
NarI	GGCGCC	1 cut(s)	150
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	75, 470
NlaIV	GGNNCC	3 cut(s)	122, 151, 237
NotI	GCGGCCGC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	88
PkrI	GCNGC	5 cut(s)	7, 35, 38, 149, 456
PluTI	GGCGCC	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	122, 151, 237
PsuI	RGATCY	2 cut(s)	75, 470
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	308, 315
SatI	GCNGC	5 cut(s)	6, 34, 37, 148, 455
Sau3AI	GATC	2 cut(s)	75, 470
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	9 cut(s)	108, 228, 363, 437, 463, 492, 513, 517, 550
SfaNI	GCATC	2 cut(s)	104, 336
SfoI	GGCGCC	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	4 cut(s)	165, 245, 279, 309
SsiI	CCGC	8 cut(s)	5, 33, 37, 133, 147, 210, 428, 439
SspDI	GGCGCC	1 cut(s)	149
SspMI	CTAG	3 cut(s)	174, 410, 512
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	4 cut(s)	165, 245, 279, 309
TauI	GCSGC	4 cut(s)	8, 36, 39, 150
Tru1I	TTAA	2 cut(s)	308, 315
Tru9I	TTAA	2 cut(s)	308, 315
TseI	GCWGC	1 cut(s)	454
XapI	RAATTY	2 cut(s)	245, 279
XmnI	GAANNNNTTC	1 cut(s)	88
XspI	CTAG	3 cut(s)	174, 410, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.