Rroxscaffold_1G00005260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001989
Physical Location & Seq
Forward (+)
7124899 .. 7129629
4731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005260.1

Sequence Viewer

Length: 369 bp
ATGGAGGAGATGGCGGCCGAAGAGGGTGGTGAGAGTGCGAGCGGCGGCCGGGTTTCGGGGAGGACGGTGGTGAAGAAAGGGAGGGATCTCGGGAAGCCGTTCCTGCATACGGGGAGCTGGTACGGATGGGTTCCGAGCAATCCGTCTCTCAATTCTAAGTATCACTACGGTGTTCCTTTGGTCCTTGTGAACACAGATAGTACACATGAAAATATGGTGAAGGGCAATGATTTGGGAAGTGATGCCACTGGGCAACCTGCTACTGCAAACTACCGGAGGACAGCGGCAGCAGGTAGGAGAAGGTCCGAGACTACTCCTGAGCTGGACAAGCACAATAACCAGGAAATGGACAGGTCTGGATTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.24

Weight (kDa)

6.91

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 265, 281
AccB7I CCANNNNNTGG 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 4 cut(s) 14, 42, 45, 284
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 2 cut(s) 15, 46
AfaI GTAC 2 cut(s) 122, 202
AfiI CCNNNNNNNGG 3 cut(s) 55, 109, 346
AjnI CCWGG 1 cut(s) 339
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 2 cut(s) 117, 322
AluI AGCT 2 cut(s) 117, 322
Alw26I GTCTC 2 cut(s) 150, 302
AlwI GGATC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 2 cut(s) 15, 46
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 181, 303
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 41, 82, 229
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 2 cut(s) 181, 303
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 4, 120
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 341
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 150, 302
BfuAI ACCTGC 2 cut(s) 265, 281
BisI GCNGC 5 cut(s) 15, 43, 46, 285, 288
BlsI GCNGC 5 cut(s) 16, 44, 47, 286, 289
Bme1390I CCNGG 2 cut(s) 50, 341
Bme18I GGWCC 2 cut(s) 181, 303
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 181, 303
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 50, 341
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 109, 346
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 341
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 55, 109, 346
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 20
BseX3I CGGCCG 2 cut(s) 15, 46
BseXI GCAGC 1 cut(s) 299
Bsh1285I CGRYCG 2 cut(s) 18, 49
BshFI GGCC 2 cut(s) 17, 48
BsiEI CGRYCG 2 cut(s) 18, 49
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 49, 274
BslI CCNNNNNNNGG 3 cut(s) 55, 109, 346
BsmAI GTCTC 2 cut(s) 150, 302
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 17, 48
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 14, 42, 45, 284
BspANI GGCC 2 cut(s) 17, 48
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 132
BspMI ACCTGC 2 cut(s) 265, 281
BspPI GGATC 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 253
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 67, 170
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 156, 318
BstF5I GGATG 1 cut(s) 131
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 150, 302
BstMBI GATC 1 cut(s) 85
BstMCI CGRYCG 2 cut(s) 18, 49
BstMWI GCNNNNNNNGC 2 cut(s) 103, 328
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 48, 339
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BstZI CGGCCG 2 cut(s) 15, 46
BsuRI GGCC 2 cut(s) 17, 48
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 2 cut(s) 265, 281
Cac8I GCNNGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 181, 303
Csp6I GTAC 2 cut(s) 121, 201
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 17, 48, 97, 117, 322
CviKI_1 RGCY 5 cut(s) 17, 48, 97, 117, 322
CviQI GTAC 2 cut(s) 121, 201
DdeI CTNAG 2 cut(s) 156, 318
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EaeI YGGCCR 2 cut(s) 15, 46
EagI CGGCCG 2 cut(s) 15, 46
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 2 cut(s) 15, 46
Eco47I GGWCC 2 cut(s) 181, 303
Eco52I CGGCCG 2 cut(s) 15, 46
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 209
FaiI YATR 3 cut(s) 108, 207, 215
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 15, 43, 46, 285, 288
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 5 cut(s) 15, 43, 46, 285, 288
GluI GCNGC 5 cut(s) 15, 43, 46, 285, 288
HaeIII GGCC 2 cut(s) 17, 48
HapII CCGG 2 cut(s) 49, 274
Hin1II CATG 1 cut(s) 209
HpaII CCGG 2 cut(s) 49, 274
HphI GGTGA 3 cut(s) 41, 82, 229
Hpy166II GTNNAC 2 cut(s) 190, 203
Hpy188I TCNGA 2 cut(s) 135, 307
Hpy188III TCNNGA 3 cut(s) 91, 317, 357
Hpy8I GTNNAC 2 cut(s) 190, 203
HpyAV CCTTC 2 cut(s) 214, 294
HpyCH4III ACNGT 2 cut(s) 67, 170
HpyCH4V TGCA 2 cut(s) 106, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 328
HpyF3I CTNAG 2 cut(s) 156, 318
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 232
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 32, 85
MflI RGATCY 1 cut(s) 85
MluCI AATT 1 cut(s) 151
MnlI CCTC 4 cut(s) 16, 54, 75, 270
MroXI GAANNNNTTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 2 cut(s) 49, 274
MspR9I CCNGG 2 cut(s) 50, 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 103, 328
NciI CCSGG 1 cut(s) 50
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 5 cut(s) 16, 44, 47, 286, 289
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 181, 303
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 122, 202
RsaNI GTAC 2 cut(s) 121, 201
RseI CAYNNNNRTG 1 cut(s) 168
SatI GCNGC 5 cut(s) 15, 43, 46, 285, 288
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 181, 303
ScrFI CCNGG 2 cut(s) 50, 341
SetI ASST 6 cut(s) 119, 259, 295, 305, 324, 356
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 2 cut(s) 181, 303
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 1 cut(s) 151
SsiI CCGC 4 cut(s) 14, 42, 45, 284
StyD4I CCNGG 2 cut(s) 48, 339
TaaI ACNGT 2 cut(s) 67, 170
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 200
TauI GCSGC 4 cut(s) 17, 45, 48, 287
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 132, 138
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 181, 303
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.