Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003433.1

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Forward (+)

9053 .. 9828

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003433.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgaggaagagcgagctggtggtggaggagaaggcggccaaagagggtggtgagagtgcgagcggctgctgggtttcagggaggacaatggtcatgagggatagctccatttctgtagtcgcttgtgttctgattgtcgctttgggtcctatccaattcggcttcacttattctctttttggttctttatcaaatgtgggtgccatggtgggggctatagccagtggtcagatttctgagtatattgggagcaaagggtctttaatcatcgccaccattcctaatgtcatcggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

98

Amino Acids

10.06

Weight (kDa)

6.15

Isoelectric Point (pI)

21.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	2 cut(s)	35, 63
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	16, 105
AluI	AGCT	2 cut(s)	16, 105
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	295
BfmI	CTRYAG	2 cut(s)	114, 216
BisI	GCNGC	3 cut(s)	36, 64, 67
BlsI	GCNGC	3 cut(s)	37, 65, 68
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	147, 202
BoxI	GACNNNNGTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	210
BsnI	GGCC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	35, 63
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	147, 202
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	2 cut(s)	14, 61
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	114, 216
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	14, 61
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	146
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	2 cut(s)	94, 205
CviJI	RGCY	8 cut(s)	16, 38, 66, 105, 162, 215, 221, 294
CviKI_1	RGCY	8 cut(s)	16, 38, 66, 105, 162, 215, 221, 294
DdeI	CTNAG	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	97, 208
FaiI	YATR	4 cut(s)	95, 206, 218, 243
FatI	CATG	2 cut(s)	93, 204
Fnu4HI	GCNGC	3 cut(s)	36, 64, 67
Fsp4HI	GCNGC	3 cut(s)	36, 64, 67
FspBI	CTAG	1 cut(s)	295
GluI	GCNGC	3 cut(s)	36, 64, 67
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	97, 208
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	132, 231, 238
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	97, 208
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	110, 249
LpnPI	CCDG	4 cut(s)	2, 55, 63, 235
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	295
MbiI	CCGCTC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	1 cut(s)	155
MnlI	CCTC	4 cut(s)	19, 37, 75, 90
MseI	TTAA	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	97, 208
NlaIV	GGNNCC	2 cut(s)	147, 202
PagI	TCATGA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	2
PkrI	GCNGC	3 cut(s)	37, 65, 68
PpuMI	RGGWCCY	1 cut(s)	146
PshAI	GACNNNNGTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	147, 202
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	36, 64, 67
Sau96I	GGNCC	1 cut(s)	146
SetI	ASST	2 cut(s)	18, 107
SfcI	CTRYAG	2 cut(s)	114, 216
SgeI	CNNG	9 cut(s)	25, 29, 72, 82, 90, 106, 135, 217, 234
SinI	GGWCC	1 cut(s)	146
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	35, 63
SspMI	CTAG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	204
TasI	AATT	1 cut(s)	155
TauI	GCSGC	2 cut(s)	38, 66
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	66
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.